Miyakogusa Predicted Gene

Lj1g3v4657810.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL Q9M6R6_VIGRR 946 79.9 85.3 (tr|Q9M6R6) RNA helicase OS=Vigna radiata var. radiata GN=VRH1 PE=2 SV=1
TAIR_pep AT5G62190.1 779 70.2 82.0 | Symbols: PRH75 | DEAD box RNA helicase (PRH75) | chr5:24980542-24983879 REVERSE LENGTH=671
Medicago Medtr1g102410.1 904 80.7 87.0 | DEAD-box ATP-dependent RNA helicase | HC | chr1:46249372-46245255 | 20130731
Soybean Glyma20g29060.1 944 78.4 86.7  
LJGI gnl|LJGI|FS335918 198 87.3 87.3 similar to UniRef100_A7QGV9 Cluster: Chromosome chr16 scaffold_94, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr16 scaffold_94, whole genome shotgun sequence - Vitis vinifera (Grape), partial (12%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4657810.1 length: 638 aa.
IPR000629 RNA helicase, ATP-dependent, DEAD-box, conserved site
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
PatternScan PS00039 DEAD_ATP_HELICASE NA 210-218
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 1.9e-22 331-398
HMMSmart SM00490 helicase 2.8e-25 317-398
ProfileScan PS51194 HELICASE_CTER 20.293 295-437
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 4.3e-44 78-254
IPR012562 GUCT
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005634 nucleus    
HMMPfam PF08152 GUCT 6.5e-34 487-583
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 2.8e-48 72-284
ProfileScan PS51192 HELICASE_ATP_BIND_1 28.554 84-266
IPR014014 RNA helicase, DEAD-box type, Q motif
ProfileScan PS51195 Q_MOTIF 7.211 53-81
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 6.2e-63 130-421
no_ID  
Gene3D G3DSA:3.40.50.300 no description 4.9e-41 48-268
270-429
HMMPanther PTHR24031 FAMILY 3.8e-249 4-637
HMMPanther PTHR24031:SF107HELICASE CONSERVED 3.8e-249 4-637
Seg seg seg NA 23-45
410-421
477-485
588-635
Wolf-PSORT
Lj1g3v4657810.1	cyto 5, nucl 3, cysk 3, cysk_nucl 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4657810.1