Miyakogusa Predicted Gene

Lj1g3v4578920.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1NA46_SOYBN 1180 82.1 89.1 (tr|I1NA46) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G02830.1 829 56.8 73.0 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr5:644458-648421 REVERSE LENGTH=852
Medicago Medtr7g100550.1 1122 80.8 89.0 | PPR containing plant-like protein | HC | chr7:40492537-40485311 | 20130731
Soybean Glyma19g36140.1 1180 82.1 89.1  
LJGI gnl|LJGI|TC78615 825 100.0 100.0 similar to UniRef100_A7PSS3 Cluster: Chromosome chr8 scaffold_29, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_29, whole genome shotgun sequence - Vitis vinifera (Grape), partial (17%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4578920.1 length: 772 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.0049 351-381
530-560
HMMPfam PF12854 PPR_1 1.5e-05 306-336
HMMPfam PF13041 PPR_2 3.1e-13 384-431
562-608
HMMPfam PF13812 PPR_3 0.69 244-276
HMMTigr TIGR00756 PPR: 1.4e-06 244-278
313-338
351-384
386-420
422-449
530-564
566-599
ProfileScan PS51375 PPR 9.076 242-276
207-241
310-340
384-418
349-383
419-453
528-562
495-527
563-597
598-635
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 0.00088 557-598
no_ID  
HMMPanther PTHR24015 FAMILY 5.8e-104 12-649
HMMPanther PTHR24015:SF0 SUBFAMILY 5.8e-104 12-649
Seg seg seg NA 9-30
36-58
Wolf-PSORT
Lj1g3v4578920.1	chlo 12, mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4578920.1