Miyakogusa Predicted Gene

Lj1g3v4528630.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1N9X3_SOYBN 1281 79.0 84.5 (tr|I1N9X3) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G04140.1 798 55.5 66.9 | Symbols: | Transducin family protein / WD-40 repeat family protein | chr1:1075984-1080321 REVERSE LENGTH=790
Medicago Medtr7g099210.1 1212 79.0 84.1 | transducin/WD-like repeat-protein | HC | chr7:39765251-39759245 | 20130731
Soybean Glyma19g35370.1 1281 79.0 84.5  
LJGI gnl|LJGI|TC68576 1402 100.0 100.0 homologue to UniRef100_A7NXM3 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape), partial (24%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4528630.1 length: 789 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 4.2e-07 100-122
126-165
HMMSmart SM00320 WD40 11 84-122
125-165
168-205
724-764
ProfileScan PS50082 WD_REPEATS_2 11.745 132-174
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 2.4e-36 648-766
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 15.636 90-174
superfamily SSF50978 WD40 0.00015 86-241
676-762
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 152-166
no_ID  
HMMPanther PTHR22874 FAMILY 3.3e-302 11-778
HMMPanther PTHR22874:SF1 SUBFAMILY 3.3e-302 11-778
Seg seg seg NA 11-27
50-65
469-489
551-555
Wolf-PSORT
Lj1g3v4528630.1	chlo 11, nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4528630.1