Miyakogusa Predicted Gene

Lj1g3v4528470.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL G7KYH2_MEDTR 965 76.7 83.2 (tr|G7KYH2) WD repeat-containing protein OS=Medicago truncatula GN=MTR_7g098900 PE=4 SV=1

TAIR_pep AT2G20330.1 832 79.3 91.3 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:8772888-8775518 REVERSE LENGTH=648

Medicago Medtr7g098900.1 965 76.7 83.2 | transducin/WD-like repeat-protein | HC | chr7:39629110-39633838 | 20130731

Soybean Glyma19g35280.1 946 91.2 96.7

LJGI gnl|LJGI|TC59901 1536 97.7 97.7 similar to UniRef100_A9TWT3 Cluster: Predicted protein; n=1; Physcomitrella patens subsp. patens|Rep: Predicted protein - Physcomitrella patens subsp. patens, partial (27%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v4528470.1 length: 612 aa.

IPR001680 WD40 repeat

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

HMMPfam PF00400 WD40 2.2e-05 140-173
244-275
296-323
335-369

HMMSmart SM00320 WD40 8e-05 134-173
183-220
232-275
285-323
330-369

ProfileScan PS50082 WD_REPEATS_2 14.485 141-182
242-284
337-378

IPR015943 WD40/YVTN repeat-like-containing domain

Molecular Function GO:0005515 protein binding

Gene3D G3DSA:2.130.10.10 no description 4.3e-50 123-458

IPR017986 WD40-repeat-containing domain

Molecular Function GO:0005515 protein binding

ProfileScan PS50294 WD_REPEATS_REGION 26.841 141-378

superfamily SSF50978 WD40 7.1e-53 113-468

IPR019775 WD40 repeat, conserved site

PatternScan PS00678 WD_REPEATS_1 NA 262-276
310-324

IPR020472 G-protein beta WD-40 repeat

FPrintScan PR00320 GPROTEINBRPT 7.6e-06 262-276
310-324
356-370

no_ID

HMMPanther PTHR16017 GASTRULATION 4e-243 48-611

HMMPanther PTHR16017:SF0 SUBFAMILY 4e-243 48-611

Seg seg seg NA 51-64
67-99
104-109
115-126

Wolf-PSORT

Lj1g3v4528470.1 nucl 13

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v4528470.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	G7KYH2_MEDTR	965	76.7	83.2	(tr\|G7KYH2) WD repeat-containing protein OS=Medicago truncatula GN=MTR_7g098900 PE=4 SV=1
TAIR_pep	AT2G20330.1	832	79.3	91.3	\| Symbols: \| Transducin/WD40 repeat-like superfamily protein \| chr2:8772888-8775518 REVERSE LENGTH=648
Medicago	Medtr7g098900.1	965	76.7	83.2	\| transducin/WD-like repeat-protein \| HC \| chr7:39629110-39633838 \| 20130731
Soybean	Glyma19g35280.1	946	91.2	96.7
LJGI	gnl\|LJGI\|TC59901	1536	97.7	97.7	similar to UniRef100_A9TWT3 Cluster: Predicted protein; n=1; Physcomitrella patens subsp. patens\|Rep: Predicted protein - Physcomitrella patens subsp. patens, partial (27%)

IPR001680	WD40 repeat
Lj1g3v4528470.1				length: 612 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
HMMPfam	PF00400	WD40	2.2e-05	140-173 244-275 296-323 335-369
HMMSmart	SM00320	WD40	8e-05	134-173 183-220 232-275 285-323 330-369
ProfileScan	PS50082	WD_REPEATS_2	14.485	141-182 242-284 337-378
IPR015943	WD40/YVTN repeat-like-containing domain
Molecular Function	GO:0005515	protein binding
Gene3D	G3DSA:2.130.10.10	no description	4.3e-50	123-458
IPR017986	WD40-repeat-containing domain
Molecular Function	GO:0005515	protein binding
ProfileScan	PS50294	WD_REPEATS_REGION	26.841	141-378
superfamily	SSF50978	WD40	7.1e-53	113-468
IPR019775	WD40 repeat, conserved site
PatternScan	PS00678	WD_REPEATS_1	NA	262-276 310-324
IPR020472	G-protein beta WD-40 repeat
FPrintScan	PR00320	GPROTEINBRPT	7.6e-06	262-276 310-324 356-370
no_ID
HMMPanther	PTHR16017	GASTRULATION	4e-243	48-611
HMMPanther	PTHR16017:SF0	SUBFAMILY	4e-243	48-611
Seg	seg	seg	NA	51-64 67-99 104-109 115-126