Miyakogusa Predicted Gene

Lj1g3v4528420.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
TrEMBL I1JP84_SOYBN 2581 84.2 89.4 (tr|I1JP84) Uncharacterized protein OS=Glycine max PE=3 SV=2
TAIR_pep AT1G04120.1 2313 78.5 86.3 | Symbols: ATMRP5, MRP5, ATABCC5, ABCC5 | multidrug resistance-associated protein 5 | chr1:1064848-1070396 REVERSE LENGTH=1514
Medicago Medtr7g098690.1 2470 81.5 86.4 | ABC transporter-like family-protein | HC | chr7:39508443-39500942 | 20130731
Soybean Glyma03g32500.1 2469 84.5 89.7  
LJGI gnl|LJGI|TC77469 981 87.0 87.0 similar to UniRef100_A7Q1J8 Cluster: Chromosome chr7 scaffold_44, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_44, whole genome shotgun sequence - Vitis vinifera (Grape), partial (23%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4528420.1 length: 1521 aa.
IPR001140 ABC transporter, transmembrane domain
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00664 ABC_membrane 7.9e-26 318-583
960-1211
IPR003439 ABC transporter-like
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
HMMPfam PF00005 ABC_tran 5.7e-20 672-782
1316-1440
ProfileScan PS50893 ABC_TRANSPORTER_2 17.560 629-853
1275-1509
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 3.3e-14 657-838
1301-1486
IPR011527 ABC transporter, transmembrane domain, type 1
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
superfamily SSF90123 ABC 5.2e-41 915-1257
303-611
IPR017871 ABC transporter, conserved site
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
PatternScan PS00211 ABC_TRANSPORTER_1 NA 755-769
IPR017940 ABC transporter, integral membrane type 1
ProfileScan PS50929 ABC_TM1F 35.526 318-595
958-1228
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 3.1e-50 1254-1495
608-839
no_ID  
Coil coil coiled-coil NA 913-934
Gene3D G3DSA:1.20.1560.10 no description 7e-55 304-608
949-1253
Gene3D G3DSA:3.40.50.300 no description 3.8e-64 630-861
1275-1511
HMMPanther PTHR24223 FAMILY 0 42-1518
HMMPanther PTHR24223:SF106GTP BINDING 0 42-1518
Seg seg seg NA 25-45
53-71
867-878
907-926
954-965
1331-1345
Wolf-PSORT
Lj1g3v4528420.1	chlo 9, plas 2, nucl 1, extr 1, vacu 1, golg_plas 1, cysk_plas 1, E.R._plas 1, mito_plas 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4528420.1