Miyakogusa Predicted Gene

Lj1g3v4528360.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I3S1W8_LOTJA 414 85.1 85.1 (tr|I3S1W8) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1

TAIR_pep AT2G33310.3 162 49.7 60.8 | Symbols: IAA13 | auxin-induced protein 13 | chr2:14114569-14115757 REVERSE LENGTH=246

Medicago Medtr1g069495.1 249 71.3 80.1 | auxin response factor | HC | chr1:30104004-30099851 | 20130731

Soybean Glyma19g35180.4 265 73.3 81.1

LJGI gnl|LJGI|TC67224 1043 100.0 100.0 similar to UniRef100_Q8RW17 Cluster: Aux/IAA protein; n=1; Populus tremula x Populus tremuloides|Rep: Aux/IAA protein - Populus tremula x Populus tremuloides, partial (41%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v4528360.1 length: 249 aa.

IPR003311 AUX/IAA protein

method AccNumber shortName E-value location

Cellular Component GO:0005634 nucleus

Biological Process GO:0006355 regulation of transcription, DNA-dependent

HMMPfam PF02309 AUX_IAA 1.2e-48 43-244

IPR011525 Aux/IAA-ARF-dimerisation

Molecular Function GO:0046983 protein dimerization activity

ProfileScan PS50962 IAA_ARF 33.681 131-237

no_ID

HMMPanther PTHR31734 FAMILY 7.5e-46 59-248

Seg seg seg NA 11-20
29-53

superfamily SSF54277 CAD 1.5e-19 118-235

Wolf-PSORT

Lj1g3v4528360.1 nucl 6, chlo 2, cyto 2, mito 2, chlo_mito 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v4528360.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I3S1W8_LOTJA	414	85.1	85.1	(tr\|I3S1W8) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep	AT2G33310.3	162	49.7	60.8	\| Symbols: IAA13 \| auxin-induced protein 13 \| chr2:14114569-14115757 REVERSE LENGTH=246
Medicago	Medtr1g069495.1	249	71.3	80.1	\| auxin response factor \| HC \| chr1:30104004-30099851 \| 20130731
Soybean	Glyma19g35180.4	265	73.3	81.1
LJGI	gnl\|LJGI\|TC67224	1043	100.0	100.0	similar to UniRef100_Q8RW17 Cluster: Aux/IAA protein; n=1; Populus tremula x Populus tremuloides\|Rep: Aux/IAA protein - Populus tremula x Populus tremuloides, partial (41%)

IPR003311	AUX/IAA protein
Lj1g3v4528360.1				length: 249 aa.
method	AccNumber	shortName	E-value	location
Cellular Component	GO:0005634	nucleus
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
HMMPfam	PF02309	AUX_IAA	1.2e-48	43-244
IPR011525	Aux/IAA-ARF-dimerisation
Molecular Function	GO:0046983	protein dimerization activity
ProfileScan	PS50962	IAA_ARF	33.681	131-237
no_ID
HMMPanther	PTHR31734	FAMILY	7.5e-46	59-248
Seg	seg	seg	NA	11-20 29-53
superfamily	SSF54277	CAD	1.5e-19	118-235