Miyakogusa Predicted Gene

Lj1g3v4518320.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JP77_SOYBN 399 58.0 65.9 (tr|I1JP77) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT4G17940.1 119 49.5 69.7 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr4:9965787-9966778 FORWARD LENGTH=274
Medicago Medtr7g099260.1 320 53.8 62.5 | TPR repeat protein | HC | chr7:39789340-39791288 | 20130731
Soybean Glyma03g32430.4 399 58.0 65.9  
LJGI gnl|LJGI|TC62760 1235 100.0 100.0 similar to UniRef100_A7NXI8 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape), partial (24%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4518320.1 length: 368 aa.
IPR003107 RNA-processing protein, HAT helix
method AccNumber shortName E-value location
Cellular Component GO:0005622 intracellular    
Biological Process GO:0006396 RNA processing    
HMMSmart SM00386 HAT 1.1e+02 241-273
276-308
311-343
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 1.2e-13 241-345
IPR013026 Tetratricopeptide repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50293 TPR_REGION 12.696 241-330
no_ID  
HMMPanther PTHR23083 TETRATRICOPEPTIDE 1.4e-48 246-346
HMMPanther PTHR23083:SF242SUBFAMILY NOT 1.4e-48 246-346
HMMPfam PF13414 TPR_11 6.5e-08 262-328
Seg seg seg NA 139-159
189-201
211-245
superfamily SSF48452 TPR-like 1.4e-11 239-349
Wolf-PSORT
Lj1g3v4518320.1	chlo 8, nucl 2, mito 2, extr 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4518320.1