Miyakogusa Predicted Gene

Lj1g3v4517300.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KFI9_SOYBN 1287 81.2 85.5 (tr|K7KFI9) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G04080.1 929 67.1 79.4 | Symbols: PRP39 | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:1051803-1056550 FORWARD LENGTH=768
Medicago Medtr7g098430.1 1229 80.1 84.5 | Pre-mRNA-processing factor 39 | HC | chr7:39392862-39401978 | 20130731
Soybean Glyma19g35140.1 1199 70.5 73.7  
LJGI gnl|LJGI|TC74488 1524 98.9 98.9 similar to UniRef100_A7Q1L2 Cluster: Chromosome chr7 scaffold_44, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_44, whole genome shotgun sequence - Vitis vinifera (Grape), partial (23%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4517300.1 length: 811 aa.
IPR003107 RNA-processing protein, HAT helix
method AccNumber shortName E-value location
Cellular Component GO:0005622 intracellular    
Biological Process GO:0006396 RNA processing    
HMMSmart SM00386 HAT 8e+02 172-204
206-238
241-276
421-453
525-560
566-598
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 8.8e-13 408-550
IPR013026 Tetratricopeptide repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50293 TPR_REGION 9.362 511-544
IPR019734 Tetratricopeptide repeat
Molecular Function GO:0005515 protein binding    
ProfileScan PS50005 TPR 8.201 511-544
no_ID  
HMMPanther PTHR17204 PRE-MRNA 0 113-805
HMMPanther PTHR17204:SF8 PRP39-RELATED 0 113-805
Seg seg seg NA 9-26
76-91
768-805
superfamily SSF48452 TPR-like 1.8e-15 372-580
Wolf-PSORT
Lj1g3v4517300.1	cyto 9, chlo 1, nucl 1, mito 1, plas 1, pero 1, chlo_mito 1, nucl_plas 1, mito_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4517300.1 Not targeted -16.553 -1.966 -1.753 8.86% -12.834