Miyakogusa Predicted Gene

Lj1g3v4435510.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7K7U5_SOYBN 1065 88.6 93.1 (tr|K7K7U5) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G26370.1 830 68.5 82.7 | Symbols: | RNA helicase family protein | chr1:9122030-9125368 REVERSE LENGTH=717
Medicago Medtr7g095080.1 1024 84.2 91.2 | ATP-dependent RNA helicase DHX35 | HC | chr7:38011601-38003021 | 20130731
Soybean Glyma01g07530.1 1052 88.0 92.9  
LJGI gnl|LJGI|TC65544 1653 99.4 99.4 similar to UniRef100_A7P496 Cluster: Chromosome chr1 scaffold_5, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_5, whole genome shotgun sequence - Vitis vinifera (Grape), partial (40%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4435510.1 length: 581 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 7.5e-14 187-277
HMMSmart SM00490 helicase 3.7e-18 169-277
ProfileScan PS51194 HELICASE_CTER 16.464 138-317
IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
PatternScan PS00690 DEAH_ATP_HELICASE NA 20-29
IPR007502 Helicase-associated domain
Molecular Function GO:0004386 helicase activity    
HMMPfam PF04408 HA2 4.2e-21 337-428
HMMSmart SM00847 Helicase 8.4e-24 337-428
IPR011709 Domain of unknown function DUF1605
HMMPfam PF07717 OB_NTP_bind 5.7e-23 486-576
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
ProfileScan PS51192 HELICASE_ATP_BIND_1 9.868 1-120
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.9e-74 1-466
no_ID  
Gene3D G3DSA:3.40.50.300 no description 4.6e-13 90-104
143-295
HMMPanther PTHR18934 ATP-DEPENDENT 1.3e-272 1-581
Wolf-PSORT
Lj1g3v4435510.1	nucl 6, cyto 6, cyto_nucl 6
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4435510.1