Miyakogusa Predicted Gene

Lj1g3v4432120.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JNU0_SOYBN 830 79.6 86.7 (tr|I1JNU0) Mitochondrial Rho GTPase OS=Glycine max PE=3 SV=1
TAIR_pep AT3G63150.1 578 57.1 74.9 | Symbols: MIRO2, ATCBG | MIRO-related GTP-ase 2 | chr3:23329200-23332692 REVERSE LENGTH=643
Medicago Medtr7g094810.1 834 80.0 86.3 | Rho GTPase | HC | chr7:37834516-37844546 | 20130731
Soybean Glyma03g30990.1 830 79.6 86.7  
LJGI gnl|LJGI|TC62047 2331 99.4 99.4 weakly similar to UniRef100_A7PU62 Cluster: Chromosome chr7 scaffold_31, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_31, whole genome shotgun sequence - Vitis vinifera (Grape), partial (58%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4432120.1 length: 504 aa.
IPR001806 Small GTPase superfamily
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0007264 small GTPase mediated signal transduction    
FPrintScan PR00449 RASTRNSFRMNG 2.4e-05 285-306
308-324
393-406
IPR011992 EF-hand-like domain
Molecular Function GO:0005509 calcium ion binding    
Gene3D G3DSA:1.10.238.10 no description 0.00079 178-209
IPR013566 EF hand associated, type-1
HMMPfam PF08355 EF_assoc_1 6e-23 210-279
IPR013567 EF hand associated, type-2
HMMPfam PF08356 EF_assoc_2 4.6e-23 90-175
IPR013684 Mitochondrial Rho-like
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0007264 small GTPase mediated signal transduction    
HMMPfam PF08477 Miro 1.3e-12 287-405
IPR018247 EF-Hand 1, calcium-binding site
PatternScan PS00018 EF_HAND_1 NA 187-199
67-79
IPR020860 MIRO
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005622 intracellular    
Biological Process GO:0007264 small GTPase mediated signal transduction    
ProfileScan PS51423 MIRO 12.903 278-456
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 7.1e-24 280-459
no_ID  
Gene3D G3DSA:3.40.50.300 no description 1.8e-18 276-466
HMMPanther PTHR24072 FAMILY 5.3e-235 12-460
HMMPanther PTHR24072:SF73 SUBFAMILY 5.3e-235 12-460
Seg seg seg NA 479-497
superfamily SSF47473 EF-hand 4.2e-12 39-238
Wolf-PSORT
Lj1g3v4432120.1	nucl 4, E.R. 4, mito 2, plas 2, cyto_nucl 2, cysk_nucl 2, mito_plas 2, cyto_E.R. 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4432120.1