Miyakogusa Predicted Gene

Lj1g3v4419770.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL A2Q4K2_MEDTR 249 35.2 51.2 (tr|A2Q4K2) DNA repair protein RAD5 OS=Medicago truncatula GN=MTR_7g089190 PE=4 SV=1

TAIR_pep AT5G05130.1 240 33.7 48.6 | Symbols: | DNA/RNA helicase protein | chr5:1512173-1514918 FORWARD LENGTH=862

Medicago Medtr7g089190.1 257 36.7 53.1 | DNA/RNA helicase | HC | chr7:34885684-34881166 | 20130731

Soybean Glyma03g28040.1 226 31.9 46.2

LJGI gnl|LJGI|TC68866 101 100.0 100.0 weakly similar to UniRef100_A7PTA3 Cluster: Chromosome chr8 scaffold_29, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_29, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v4419770.1 length: 440 aa.

IPR000330 SNF2-related

method AccNumber shortName E-value location

Molecular Function GO:0003677 DNA binding

Molecular Function GO:0005524 ATP binding

HMMPfam PF00176 SNF2_N 1.7e-24 43-230

IPR001841 Zinc finger, RING-type

Molecular Function GO:0005515 protein binding

Molecular Function GO:0008270 zinc ion binding

HMMSmart SM00184 Ring 4.1e-06 341-379

ProfileScan PS50089 ZF_RING_2 12.681 341-380

IPR013083 Zinc finger, RING/FYVE/PHD-type

Gene3D G3DSA:3.30.40.10 no description 1.6e-15 325-388

IPR017907 Zinc finger, RING-type, conserved site

PatternScan PS00518 ZF_RING_1 NA 356-365

IPR027417 P-loop containing nucleoside triphosphate hydrolase

superfamily SSF52540 P-loop 1.1e-15 29-228

no_ID

HMMPanther PTHR10799 SWI/SNF-RELATED 9.2e-59 34-437

HMMPanther PTHR10799:SF152DNA REPAIR 9.2e-59 34-437

HMMPfam PF13923 zf-C3HC4_2 8.3e-11 339-381

Seg seg seg NA 9-25
316-326

superfamily SSF57850 RING/U-box 2.3e-15 322-386

Wolf-PSORT

Lj1g3v4419770.1 nucl 8, cyto 5

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v4419770.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	A2Q4K2_MEDTR	249	35.2	51.2	(tr\|A2Q4K2) DNA repair protein RAD5 OS=Medicago truncatula GN=MTR_7g089190 PE=4 SV=1
TAIR_pep	AT5G05130.1	240	33.7	48.6	\| Symbols: \| DNA/RNA helicase protein \| chr5:1512173-1514918 FORWARD LENGTH=862
Medicago	Medtr7g089190.1	257	36.7	53.1	\| DNA/RNA helicase \| HC \| chr7:34885684-34881166 \| 20130731
Soybean	Glyma03g28040.1	226	31.9	46.2
LJGI	gnl\|LJGI\|TC68866	101	100.0	100.0	weakly similar to UniRef100_A7PTA3 Cluster: Chromosome chr8 scaffold_29, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr8 scaffold_29, whole genome shotgun sequence - Vitis vinifera (Grape), partial (9%)

IPR000330	SNF2-related
Lj1g3v4419770.1				length: 440 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003677	DNA binding
Molecular Function	GO:0005524	ATP binding
HMMPfam	PF00176	SNF2_N	1.7e-24	43-230
IPR001841	Zinc finger, RING-type
Molecular Function	GO:0005515	protein binding
Molecular Function	GO:0008270	zinc ion binding
HMMSmart	SM00184	Ring	4.1e-06	341-379
ProfileScan	PS50089	ZF_RING_2	12.681	341-380
IPR013083	Zinc finger, RING/FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	no description	1.6e-15	325-388
IPR017907	Zinc finger, RING-type, conserved site
PatternScan	PS00518	ZF_RING_1	NA	356-365
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	1.1e-15	29-228
no_ID
HMMPanther	PTHR10799	SWI/SNF-RELATED	9.2e-59	34-437
HMMPanther	PTHR10799:SF152DNA	REPAIR	9.2e-59	34-437
HMMPfam	PF13923	zf-C3HC4_2	8.3e-11	339-381
Seg	seg	seg	NA	9-25 316-326
superfamily	SSF57850	RING/U-box	2.3e-15	322-386