Miyakogusa Predicted Gene

Lj1g3v4393320.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7KWD0_MEDTR 894 78.9 89.2 (tr|G7KWD0) Pentatricopeptide repeat protein OS=Medicago truncatula GN=MTR_7g093900 PE=4 SV=1
TAIR_pep AT2G22410.1 461 42.4 63.7 | Symbols: SLO1 | SLOW GROWTH 1 | chr2:9509035-9511080 FORWARD LENGTH=681
Medicago Medtr7g093900.2 915 78.5 88.8 | PPR containing plant-like protein | HC | chr7:37366165-37359102 | 20130731
Soybean Glyma03g30430.1 840 77.4 84.1  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4393320.1 length: 555 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.0037 1-29
174-200
202-226
407-431
HMMPfam PF13041 PPR_2 1.8e-12 98-146
230-277
333-380
HMMTigr TIGR00756 PPR: 7.1e-09 1-34
101-135
173-201
202-226
233-265
335-368
ProfileScan PS51375 PPR 7.695 1-32
99-133
68-98
134-168
231-265
200-230
169-199
333-367
302-332
266-301
368-403
404-438
470-504
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 4.4e-08 433-471
no_ID  
HMMPanther PTHR24015 FAMILY 9.5e-223 1-553
HMMPanther PTHR24015:SF148SUBFAMILY NOT 9.5e-223 1-553
Wolf-PSORT
Lj1g3v4393320.1	chlo_mito 6.16667, chlo 6, mito 6
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4393320.1