Miyakogusa Predicted Gene

Lj1g3v4275530.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL A2Q3L5_MEDTR 1071 75.8 80.1 (tr|A2Q3L5) Zinc finger CCCH domain-containing protein OS=Medicago truncatula GN=MTR_7g092070 PE=4 SV=1

TAIR_pep AT2G41900.1 796 59.1 67.3 | Symbols: | CCCH-type zinc finger protein with ARM repeat domain | chr2:17491352-17493502 FORWARD LENGTH=716

Medicago Medtr7g092070.1 1071 75.8 80.1 | ARM repeat CCCH-type zinc finger protein | HC | chr7:36454363-36458250 | 20130731

Soybean Glyma10g21950.1 991 72.4 78.1

LJGI gnl|LJGI|BP063686 983 99.4 99.4 homologue to UniRef100_A2Q3L5 Cluster: Zinc finger, CCCH-type; n=1; Medicago truncatula|Rep: Zinc finger, CCCH-type - Medicago truncatula (Barrel medic), partial (21%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v4275530.1 length: 729 aa.

IPR000571 Zinc finger, CCCH-type

method AccNumber shortName E-value location

Molecular Function GO:0003676 nucleic acid binding

Molecular Function GO:0008270 zinc ion binding

HMMPfam PF00642 zf-CCCH 8.8e-05 305-326

HMMSmart SM00356 zinc 33 301-327
336-359

ProfileScan PS50103 ZF_C3H1 13.582 306-328

IPR002110 Ankyrin repeat

Molecular Function GO:0005515 protein binding

HMMSmart SM00248 ankyrin 0.0021 40-70
87-117
122-154

ProfileScan PS50088 ANK_REPEAT 11.541 122-157

IPR020683 Ankyrin repeat-containing domain

Gene3D G3DSA:1.25.40.20 no description 1.2e-16 44-188

HMMPfam PF12796 Ank_2 1.6e-11 92-168

ProfileScan PS50297 ANK_REP_REGION 16.600 87-190

superfamily SSF48403 Ankyrin 2.9e-17 19-176

no_ID

HMMPanther PTHR14493 UNCHARACTERIZED 9.5e-238 41-673

HMMPanther PTHR14493:SF18 PEI1, 9.5e-238 41-673

Seg seg seg NA 378-407
443-450
610-625
676-698

superfamily SSF90229 CCCH 0.0096 296-329
331-366

Wolf-PSORT

Lj1g3v4275530.1 nucl 12, plas 1, vacu 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v4275530.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	A2Q3L5_MEDTR	1071	75.8	80.1	(tr\|A2Q3L5) Zinc finger CCCH domain-containing protein OS=Medicago truncatula GN=MTR_7g092070 PE=4 SV=1
TAIR_pep	AT2G41900.1	796	59.1	67.3	\| Symbols: \| CCCH-type zinc finger protein with ARM repeat domain \| chr2:17491352-17493502 FORWARD LENGTH=716
Medicago	Medtr7g092070.1	1071	75.8	80.1	\| ARM repeat CCCH-type zinc finger protein \| HC \| chr7:36454363-36458250 \| 20130731
Soybean	Glyma10g21950.1	991	72.4	78.1
LJGI	gnl\|LJGI\|BP063686	983	99.4	99.4	homologue to UniRef100_A2Q3L5 Cluster: Zinc finger, CCCH-type; n=1; Medicago truncatula\|Rep: Zinc finger, CCCH-type - Medicago truncatula (Barrel medic), partial (21%)

IPR000571	Zinc finger, CCCH-type
Lj1g3v4275530.1				length: 729 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003676	nucleic acid binding
Molecular Function	GO:0008270	zinc ion binding
HMMPfam	PF00642	zf-CCCH	8.8e-05	305-326
HMMSmart	SM00356	zinc	33	301-327 336-359
ProfileScan	PS50103	ZF_C3H1	13.582	306-328
IPR002110	Ankyrin repeat
Molecular Function	GO:0005515	protein binding
HMMSmart	SM00248	ankyrin	0.0021	40-70 87-117 122-154
ProfileScan	PS50088	ANK_REPEAT	11.541	122-157
IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	no description	1.2e-16	44-188
HMMPfam	PF12796	Ank_2	1.6e-11	92-168
ProfileScan	PS50297	ANK_REP_REGION	16.600	87-190
superfamily	SSF48403	Ankyrin	2.9e-17	19-176
no_ID
HMMPanther	PTHR14493	UNCHARACTERIZED	9.5e-238	41-673
HMMPanther	PTHR14493:SF18	PEI1,	9.5e-238	41-673
Seg	seg	seg	NA	378-407 443-450 610-625 676-698
superfamily	SSF90229	CCCH	0.0096	296-329 331-366