Miyakogusa Predicted Gene

Lj1g3v4139410.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7I3D9_MEDTR 1263 73.1 82.5 (tr|G7I3D9) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_1g007600 PE=4 SV=1
TAIR_pep AT2G13600.1 453 34.9 57.0 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr2:5671493-5673586 FORWARD LENGTH=697
Medicago Medtr1g007600.1 1263 73.1 82.5 | pentatricopeptide (PPR) repeat protein | HC | chr1:452191-449631 | 20130731
Soybean Glyma14g25840.1 1160 68.7 77.1  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4139410.1 length: 847 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.041 92-115
119-144
194-219
329-351
359-388
495-524
630-658
666-695
703-727
HMMPfam PF13041 PPR_2 1.4e-11 219-267
391-438
527-575
HMMTigr TIGR00756 PPR: 0.00022 222-255
359-391
393-427
495-527
529-563
630-664
ProfileScan PS51375 PPR 6.116 116-146
85-115
220-254
189-219
154-188
255-289
356-390
325-355
391-425
426-460
492-526
527-561
562-596
628-662
597-627
664-698
699-729
731-761
765-799
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 5.9e-07 674-675
no_ID  
HMMPanther PTHR24015 FAMILY 1.4e-215 189-840
HMMPanther PTHR24015:SF169PENTATRICOPEPTIDE (PPR) 1.4e-215 189-840
Seg seg seg NA 132-149
151-162
Wolf-PSORT
Lj1g3v4139410.1	chlo 11, nucl 2.5, cysk_nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4139410.1