Miyakogusa Predicted Gene
- Lj1g3v4118240.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
Q2HSX6_MEDTR |
172 |
56.4 |
69.1 |
(tr|Q2HSX6) Cyclin-like F-box OS=Medicago truncatula GN=MTR_7g089730 PE=4 SV=1 |
| TAIR_pep |
AT2G26850.1 |
113 |
39.9 |
58.3 |
| Symbols: | F-box family protein | chr2:11449369-11450889 REVERSE LENGTH=371 |
| Medicago |
Medtr7g089730.1 |
172 |
56.4 |
69.1 |
| F-box plant-like protein | LC | chr7:35146477-35144993 | 20130731 |
| Soybean |
Glyma10g18630.1 |
143 |
48.1 |
63.7 |
|
| LJGI |
gnl|LJGI|GO024643 |
232 |
89.4 |
89.4 |
weakly similar to UniRef100_Q2HSX6 Cluster: Cyclin-like F-box; n=1; Medicago truncatula|Rep: Cyclin-like F-box - Medicago truncatula (Barrel medic), partial (49%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v4118240.1 |
length: 168 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF00646 |
F-box |
2e-08 |
12-56 |
| HMMSmart |
SM00256 |
A |
3.7e-07 |
16-56 |
| ProfileScan |
PS50181 |
FBOX |
13.313 |
10-56 |
| superfamily |
SSF81383 |
F-box |
8.6e-11 |
3-147 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1280.50 |
no description |
8.6e-09 |
13-78 |
| HMMPanther |
PTHR31482 |
FAMILY |
2.5e-28 |
1-146 |
| HMMPanther |
PTHR31482:SF0 |
SUBFAMILY |
2.5e-28 |
1-146 |
- Wolf-PSORT
Lj1g3v4118240.1 cyto 5.5, cyto_E.R. 3.5, nucl 3, chlo 1, plas 1, extr 1, cysk 1, golg 1, golg_plas 1, cysk_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v4118240.1 |
|