Miyakogusa Predicted Gene
- Lj1g3v4118220.3
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7KEN7_SOYBN |
190 |
60.0 |
70.6 |
(tr|K7KEN7) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT2G26850.1 |
102 |
37.3 |
51.5 |
| Symbols: | F-box family protein | chr2:11449369-11450889 REVERSE LENGTH=371 |
| Medicago |
Medtr7g089730.1 |
175 |
51.8 |
65.9 |
| F-box plant-like protein | LC | chr7:35146477-35144993 | 20130731 |
| Soybean |
Glyma10g18630.1 |
161 |
48.7 |
63.9 |
|
| LJGI |
gnl|LJGI|GO024643 |
831 |
95.2 |
95.2 |
weakly similar to UniRef100_Q2HSX6 Cluster: Cyclin-like F-box; n=1; Medicago truncatula|Rep: Cyclin-like F-box - Medicago truncatula (Barrel medic), partial (49%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v4118220.3 |
length: 166 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF00646 |
F-box |
2.9e-09 |
9-54 |
| HMMSmart |
SM00256 |
A |
6.7e-06 |
13-53 |
| ProfileScan |
PS50181 |
FBOX |
12.703 |
7-53 |
| superfamily |
SSF81383 |
F-box |
2.7e-09 |
10-78 |
| no_ID |
|
| Gene3D |
G3DSA:1.20.1280.50 |
no description |
1.5e-07 |
11-65 |
| HMMPanther |
PTHR31482 |
FAMILY |
1.5e-28 |
1-144 |
| HMMPanther |
PTHR31482:SF0 |
SUBFAMILY |
1.5e-28 |
1-144 |
| Seg |
seg |
seg |
NA |
80-85 |
- Wolf-PSORT
Lj1g3v4118220.3 cyto 4.5, nucl 4, cyto_E.R. 3, plas 2, extr 2, cysk_nucl 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v4118220.3 |
|