Miyakogusa Predicted Gene

Lj1g3v4104770.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A2Q4K2_MEDTR 1080 63.8 74.5 (tr|A2Q4K2) DNA repair protein RAD5 OS=Medicago truncatula GN=MTR_7g089190 PE=4 SV=1
TAIR_pep AT5G05130.1 615 59.8 74.9 | Symbols: | DNA/RNA helicase protein | chr5:1512173-1514918 FORWARD LENGTH=862
Medicago Medtr7g089190.1 1097 65.6 76.7 | DNA/RNA helicase | HC | chr7:34885684-34881166 | 20130731
Soybean Glyma03g28040.1 908 57.7 70.8  
LJGI gnl|LJGI|TC64078 2228 99.6 99.6 similar to UniRef100_A2Q4K2 Cluster: SNF2-related; Zinc finger, RING-type; ATP-requiring DNA helicase RecQ; n=1; Medicago truncatula|Rep: SNF2-related; Zinc finger, RING-type; ATP-requiring DNA helicase RecQ - Medicago truncatula (Barrel medic), partial (40%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v4104770.1 length: 811 aa.
IPR000330 SNF2-related
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00176 SNF2_N 3.9e-68 196-531
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 1e-11 684-763
HMMSmart SM00490 helicase 3.6e-16 678-763
ProfileScan PS51194 HELICASE_CTER 14.492 650-808
IPR001841 Zinc finger, RING-type
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00184 Ring 7.2e-05 575-613
ProfileScan PS50089 ZF_RING_2 12.357 575-614
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 2.6e-15 568-629
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 5.1e-20 189-432
ProfileScan PS51192 HELICASE_ATP_BIND_1 15.816 234-425
IPR014905 HIP116, Rad5p N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
Molecular Function GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides    
HMMPfam PF08797 HIRAN 1.5e-14 23-116
HMMSmart SM00910 no description 3.2e-20 22-118
IPR017907 Zinc finger, RING-type, conserved site
PatternScan PS00518 ZF_RING_1 NA 590-599
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.8e-48 166-463
464-806
no_ID  
Gene3D G3DSA:3.40.50.300 no description 2.6e-14 185-425
641-790
HMMPanther PTHR10799 SWI/SNF-RELATED 8.2e-197 20-791
HMMPanther PTHR10799:SF61 HELICASE-LIKE 8.2e-197 20-791
HMMPfam PF13923 zf-C3HC4_2 7.7e-11 571-615
Seg seg seg NA 250-266
281-291
676-684
superfamily SSF57850 RING/U-box 1.1e-15 558-620
Wolf-PSORT
Lj1g3v4104770.1	nucl 7, cyto 4, chlo 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v4104770.1