Miyakogusa Predicted Gene

Lj1g3v3976000.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7MXW4_SOYBN 809 68.8 77.6 (tr|K7MXW4) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G35910.1 666 50.6 62.3 | Symbols: | Polynucleotidyl transferase, ribonuclease H fold protein with HRDC domain | chr5:14029871-14035405 REVERSE LENGTH=870
Medicago Medtr7g086370.1 810 58.6 67.6 | 3'-5' exonuclease | HC | chr7:33513431-33524154 | 20130731
Soybean Glyma17g24130.1 721 53.4 65.5  
LJGI gnl|LJGI|AV773940 373 98.5 98.5 similar to UniRef100_A7QRH3 Cluster: Chromosome chr8 scaffold_150, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_150, whole genome shotgun sequence - Vitis vinifera (Grape), partial (15%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3976000.1 length: 721 aa.
IPR002121 HRDC domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Cellular Component GO:0005622 intracellular    
HMMPfam PF00570 HRDC 3e-12 441-508
HMMSmart SM00341 Helicase 1.7e-08 438-518
ProfileScan PS50967 HRDC 16.666 438-519
IPR002562 3'-5' exonuclease domain
Molecular Function GO:0003676 nucleic acid binding    
Biological Process GO:0006139 nucleobase-containing compound metabolic process    
Molecular Function GO:0008408 3'-5' exonuclease activity    
HMMPfam PF01612 DNA_pol_A_exo1 5.3e-44 222-386
HMMSmart SM00474 3'-5' 2.5e-43 219-388
IPR010997 HRDC-like
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0044237 cellular metabolic process    
superfamily SSF47819 HRDC-like 4.8e-19 422-518
IPR012337 Ribonuclease H-like domain
Molecular Function GO:0003676 nucleic acid binding    
superfamily SSF53098 Ribonuclease 1e-72 154-436
IPR012588 Exosome-associated factor Rrp6, N-terminal
Cellular Component GO:0000176 nuclear exosome (RNase complex)    
Biological Process GO:0006396 RNA processing    
HMMPfam PF08066 PMC2NT 8.1e-05 17-98
no_ID  
Coil coil coiled-coil NA 509-530
Gene3D G3DSA:3.30.420.10 no description 8.1e-14 219-400
HMMPanther PTHR12124 POLYMYOSITIS/SCLERODERMA 3.9e-190 11-541
HMMPanther PTHR12124:SF2 POLYMYOSITIS/SCLERODERMA 3.9e-190 11-541
Seg seg seg NA 83-110
527-546
666-675
Wolf-PSORT
Lj1g3v3976000.1	cyto 9, nucl 3, chlo 1, cysk 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3976000.1