Miyakogusa Predicted Gene

Lj1g3v3975960.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1N8B6_SOYBN 687 93.3 96.2 (tr|I1N8B6) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT2G43770.1 627 83.5 91.6 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr2:18134272-18135303 REVERSE LENGTH=343
Medicago Medtr7g086360.1 669 89.6 95.1 | U5 small nuclear ribonucleoprotein 40 kDa-like protein | HC | chr7:33509053-33512350 | 20130731
Soybean Glyma19g29230.1 687 93.3 96.2  
LJGI gnl|LJGI|TC82508 2030 99.6 99.6 similar to UniRef100_A7QAV0 Cluster: Chromosome chr5 scaffold_72, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_72, whole genome shotgun sequence - Vitis vinifera (Grape), partial (87%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3975960.1 length: 345 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 3.7e-06 48-83
92-126
130-169
183-210
214-252
278-302
309-342
HMMSmart SM00320 WD40 0.0017 44-83
87-126
129-169
172-210
213-252
259-302
305-344
ProfileScan PS50082 WD_REPEATS_2 9.071 51-84
94-135
155-178
185-219
220-254
281-311
312-345
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 3.1e-83 47-342
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 56.869 51-345
superfamily SSF50978 WD40 3.9e-82 51-344
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 70-84
113-127
156-170
197-211
289-303
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 1.1e-08 70-84
113-127
156-170
no_ID  
HMMPanther PTHR22847 WD40 4.1e-259 16-345
HMMPanther PTHR22847:SF104OS06G0131100 PROTEIN 4.1e-259 16-345
Wolf-PSORT
Lj1g3v3975960.1	nucl 7, cyto 4, cysk_nucl 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3975960.1