Miyakogusa Predicted Gene
- Lj1g3v3975590.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SA27_LOTJA |
535 |
97.4 |
97.8 |
(tr|I3SA27) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT5G32450.1 |
376 |
68.5 |
83.9 |
| Symbols: | RNA binding (RRM/RBD/RNP motifs) family protein | chr5:12079707-12081317 FORWARD LENGTH=267 |
| Medicago |
Medtr7g086080.1 |
439 |
80.3 |
89.2 |
| RNA-binding (RRM/RBD/RNP motif) family protein | HC | chr7:33392159-33388471 | 20130731 |
| Soybean |
Glyma16g04290.2 |
446 |
82.2 |
90.2 |
|
| LJGI |
gnl|LJGI|TC58911 |
1624 |
100.0 |
100.0 |
similar to UniRef100_Q2HVL4 Cluster: RNA-binding region RNP-1; n=1; Medicago truncatula|Rep: RNA-binding region RNP-1 - Medicago truncatula (Barrel medic), partial (97%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v3975590.1 |
length: 272 aa. |
| IPR000504 |
RNA recognition motif domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003676 |
nucleic acid binding |
|
|
| HMMPfam |
PF00076 |
RRM_1 |
1.3e-05 |
8-66 |
| HMMSmart |
SM00360 |
RNA |
1.7e-06 |
5-74 |
| ProfileScan |
PS50102 |
RRM |
9.729 |
4-78 |
| IPR012677 |
Nucleotide-binding, alpha-beta plait |
| Molecular Function |
GO:0000166 |
nucleotide binding |
|
|
| Gene3D |
G3DSA:3.30.70.330 |
no description |
4.9e-07 |
2-73 |
| no_ID |
|
| superfamily |
SSF54928 |
RNA-binding |
8.6e-11 |
4-77 |
- Wolf-PSORT
Lj1g3v3975590.1 cyto 9.5, cyto_nucl 6, mito 2, nucl 1.5, chlo_mito 1.5
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v3975590.1 |
|