Miyakogusa Predicted Gene

Lj1g3v3975290.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1N898_SOYBN 840 92.4 94.9 (tr|I1N898) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT5G19780.1 830 90.3 94.7 | Symbols: TUA5 | tubulin alpha-5 | chr5:6687212-6688926 FORWARD LENGTH=450
Medicago Medtr7g085800.1 832 91.2 94.7 | tubulin beta-1 chain | HC | chr7:33268219-33271648 | 20130731
Soybean Glyma19g28990.1 840 92.4 94.9  
LJGI gnl|LJGI|TC79990 1187 100.0 100.0 homologue to UniRef100_A8DS92 Cluster: Alpha-tubulin 6; n=1; Populus tremuloides|Rep: Alpha-tubulin 6 - Populus tremuloides (Quaking aspen), partial (44%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3975290.1 length: 449 aa.
IPR000217 Tubulin
method AccNumber shortName E-value location
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005874 microtubule    
Biological Process GO:0007017 microtubule-based process    
FPrintScan PR01161 TUBULIN 4.9e-89 10-30
53-72
95-106
108-132
134-152
153-174
178-191
192-212
380-408
HMMPanther PTHR11588 TUBULIN 0 1-449
IPR002452 Alpha tubulin
Molecular Function GO:0005200 structural constituent of cytoskeleton    
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005874 microtubule    
FPrintScan PR01162 ALPHATUBULIN 1.8e-114 18-33
45-58
88-101
120-128
148-160
161-172
214-226
274-289
321-342
347-360
360-379
385-401
422-438
IPR003008 Tubulin/FtsZ, GTPase domain
Cellular Component GO:0043234 protein complex    
Biological Process GO:0051258 protein polymerization    
Gene3D G3DSA:3.40.50.1440 no description 4.6e-125 1-268
HMMPfam PF00091 Tubulin 1.1e-69 3-225
HMMSmart SM00864 Tubulin/FtsZ 6.5e-71 49-246
superfamily SSF52490 Tubulin 6e-96 1-245
IPR008280 Tubulin/FtsZ, C-terminal
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Cellular Component GO:0043234 protein complex    
Biological Process GO:0051258 protein polymerization    
superfamily SSF55307 Tubulin 1.7e-82 246-440
IPR017975 Tubulin, conserved site
Molecular Function GO:0005525 GTP binding    
Cellular Component GO:0005874 microtubule    
Biological Process GO:0007017 microtubule-based process    
PatternScan PS00227 TUBULIN NA 142-148
IPR018316 Tubulin/FtsZ, 2-layer sandwich domain
Molecular Function GO:0003924 GTPase activity    
Molecular Function GO:0005525 GTP binding    
Biological Process GO:0006184 GTP catabolic process    
Cellular Component GO:0043234 protein complex    
Biological Process GO:0051258 protein polymerization    
Gene3D G3DSA:3.30.1330.20 no description 1.7e-55 269-383
HMMPfam PF03953 Tubulin_C 1.7e-51 263-392
HMMSmart SM00865 Tubulin/FtsZ 2.5e-51 248-393
IPR023123 Tubulin, C-terminal
Gene3D G3DSA:1.10.287.600 no description 1.4e-27 385-437
no_ID  
Coil coil coiled-coil NA 418-446
Seg seg seg NA 142-158
433-448
Wolf-PSORT
Lj1g3v3975290.1	cyto 10, cysk 2, chlo 1, nucl 1, cysk_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3975290.1