Miyakogusa Predicted Gene
- Lj1g3v3974960.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1L203_SOYBN |
395 |
78.7 |
86.6 |
(tr|I1L203) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT4G02220.1 |
283 |
54.1 |
70.2 |
| Symbols: | zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein | chr4:976728-978902 FORWARD LENGTH=418 |
| Medicago |
Medtr7g105630.5 |
382 |
77.0 |
87.4 |
| programmed cell death protein | HC | chr7:42841463-42836119 | 20130731 |
| Soybean |
Glyma09g09740.3 |
395 |
78.7 |
86.6 |
|
| LJGI |
gnl|LJGI|TC74963 |
462 |
87.0 |
87.0 |
similar to UniRef100_A7Q0H5 Cluster: Chromosome chr7 scaffold_42, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr7 scaffold_42, whole genome shotgun sequence - Vitis vinifera (Grape), partial (43%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v3974960.1 |
length: 286 aa. |
| IPR002893 |
Zinc finger, MYND-type |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0008270 |
zinc ion binding |
|
|
| HMMPfam |
PF01753 |
zf-MYND |
2.1e-07 |
183-221 |
| PatternScan |
PS01360 |
ZF_MYND_1 |
NA |
183-221 |
| ProfileScan |
PS50865 |
ZF_MYND_2 |
11.317 |
183-221 |
| no_ID |
|
| HMMPanther |
PTHR12298 |
PCDC2 |
3.1e-70 |
9-274 |
| HMMPanther |
PTHR12298:SF4 |
PCDC2/RP-8 |
3.1e-70 |
9-274 |
| Seg |
seg |
seg |
NA |
20-43 |
| superfamily |
SSF144232 |
HIT/MYND |
7.8e-11 |
173-221 |
- Wolf-PSORT
Lj1g3v3974960.1 nucl 9, cyto 2, chlo 1, plas 1, extr 1, cyto_pero 1, cyto_E.R. 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v3974960.1 |
|