Miyakogusa Predicted Gene
- Lj1g3v3948090.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7MCI9_SOYBN |
201 |
42.4 |
57.6 |
(tr|K7MCI9) Uncharacterized protein OS=Glycine max PE=3 SV=1 |
| TAIR_pep |
AT5G55690.1 |
68.6 |
28.9 |
48.3 |
| Symbols: | MADS-box transcription factor family protein | chr5:22548790-22549623 REVERSE LENGTH=277 |
| Medicago |
Medtr4g045977.1 |
138 |
29.2 |
44.8 |
| MADS-SRF-like domain protein | LC | chr4:15977633-15978817 | 20130731 |
| Soybean |
Glyma15g23350.1 |
153 |
51.0 |
69.4 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v3948090.1 |
length: 506 aa. |
| IPR002100 |
Transcription factor, MADS-box |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Molecular Function |
GO:0046983 |
protein dimerization activity |
|
|
| HMMPfam |
PF00319 |
SRF-TF |
1.1e-05 |
9-49 |
| HMMSmart |
SM00432 |
no description |
0.00049 |
1-63 |
| ProfileScan |
PS50066 |
MADS_BOX_2 |
12.867 |
1-48 |
| superfamily |
SSF55455 |
SRF-like |
1.2e-11 |
2-101 |
| no_ID |
|
| Seg |
seg |
seg |
NA |
412-425 |
- Wolf-PSORT
Lj1g3v3948090.1 cyto 6, nucl 3, cyto_pero 3, cyto_E.R. 3
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v3948090.1 |
|