Miyakogusa Predicted Gene

Lj1g3v3948080.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7IGR9_MEDTR 697 76.4 84.7 (tr|G7IGR9) Polygalacturonase OS=Medicago truncatula GN=MTR_2g060350 PE=3 SV=1
TAIR_pep AT3G07970.1 451 56.3 72.1 | Symbols: QRT2 | Pectin lyase-like superfamily protein | chr3:2541006-2543370 FORWARD LENGTH=439
Medicago Medtr2g060350.1 697 76.4 84.7 | polygalacturonase | HC | chr2:24855141-24858654 | 20130731
Soybean Glyma12g01480.1 688 75.3 83.1  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3948080.1 length: 462 aa.
IPR000743 Glycoside hydrolase, family 28
method AccNumber shortName E-value location
Molecular Function GO:0004650 polygalacturonase activity    
Biological Process GO:0005975 carbohydrate metabolic process    
HMMPfam PF00295 Glyco_hydro_28 5.5e-114 120-449
PatternScan PS00502 POLYGALACTURONASE NA 304-317
IPR006626 Parallel beta-helix repeat
HMMSmart SM00710 Parallel 3.1e+03 247-273
274-295
327-348
356-377
IPR011050 Pectin lyase fold/virulence factor
superfamily SSF51126 Pectin 1.5e-123 74-461
IPR012334 Pectin lyase fold
Gene3D G3DSA:2.160.20.10 no description 1.3e-123 84-460
no_ID  
HMMPanther PTHR31375 FAMILY 6.6e-182 26-458
HMMPanther PTHR31375:SF0 SUBFAMILY 6.6e-182 26-458
Seg seg seg NA 7-19
Putative transmembrane regions
  From To
TM segments
SOSUI		 3 25
Wolf-PSORT
Lj1g3v3948080.1	extr 9, vacu 2, cysk_plas 1.33333, mito_plas 1.33333
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3948080.1