Miyakogusa Predicted Gene

Lj1g3v3948040.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1L9D4_SOYBN 367 73.1 79.8 (tr|I1L9D4) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT3G45590.2 243 52.9 66.1 | Symbols: ATSEN1, SEN1 | splicing endonuclease 1 | chr3:16733062-16733775 FORWARD LENGTH=237

Medicago Medtr7g092500.1 359 70.4 77.8 | tRNA-splicing endonuclease subunit Sen2 | HC | chr7:36664633-36662946 | 20130731

Soybean Glyma10g08440.2 367 73.1 79.8

LJGI gnl|LJGI|TC67451 1443 100.0 100.0 similar to UniRef100_A2Q3E8 Cluster: TRNA intron endonuclease, catalytic C-terminal; n=1; Medicago truncatula|Rep: TRNA intron endonuclease, catalytic C-terminal - Medicago truncatula (Barrel medic), partial (96%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v3948040.1 length: 241 aa.

IPR006677 tRNA intron endonuclease, catalytic domain-like

method AccNumber shortName E-value location

Molecular Function GO:0000213 tRNA-intron endonuclease activity

Biological Process GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation

HMMPfam PF01974 tRNA_int_endo 1.2e-22 124-212

superfamily SSF53032 tRNA-intron 3.1e-20 122-212

IPR006678 tRNA intron endonuclease, N-terminal

Molecular Function GO:0000213 tRNA-intron endonuclease activity

Biological Process GO:0006388 tRNA splicing, via endonucleolytic cleavage and ligation

HMMPfam PF02778 tRNA_int_endo_N 6.6e-12 42-114

IPR011856 tRNA endonuclease-like domain

Molecular Function GO:0003676 nucleic acid binding

Molecular Function GO:0004518 nuclease activity

Gene3D G3DSA:3.40.1350.10 no description 7.6e-22 124-212

no_ID

HMMPanther PTHR21227 TRNA-SPLICING 8.6e-56 43-240

HMMPanther PTHR21227:SF0 SUBFAMILY 8.6e-56 43-240

Seg seg seg NA 6-23

Wolf-PSORT

Lj1g3v3948040.1 nucl 9, cyto 3, mito 1, cysk 1

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v3948040.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1L9D4_SOYBN	367	73.1	79.8	(tr\|I1L9D4) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT3G45590.2	243	52.9	66.1	\| Symbols: ATSEN1, SEN1 \| splicing endonuclease 1 \| chr3:16733062-16733775 FORWARD LENGTH=237
Medicago	Medtr7g092500.1	359	70.4	77.8	\| tRNA-splicing endonuclease subunit Sen2 \| HC \| chr7:36664633-36662946 \| 20130731
Soybean	Glyma10g08440.2	367	73.1	79.8
LJGI	gnl\|LJGI\|TC67451	1443	100.0	100.0	similar to UniRef100_A2Q3E8 Cluster: TRNA intron endonuclease, catalytic C-terminal; n=1; Medicago truncatula\|Rep: TRNA intron endonuclease, catalytic C-terminal - Medicago truncatula (Barrel medic), partial (96%)

IPR006677	tRNA intron endonuclease, catalytic domain-like
Lj1g3v3948040.1				length: 241 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0000213	tRNA-intron endonuclease activity
Biological Process	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation
HMMPfam	PF01974	tRNA_int_endo	1.2e-22	124-212
superfamily	SSF53032	tRNA-intron	3.1e-20	122-212
IPR006678	tRNA intron endonuclease, N-terminal
Molecular Function	GO:0000213	tRNA-intron endonuclease activity
Biological Process	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation
HMMPfam	PF02778	tRNA_int_endo_N	6.6e-12	42-114
IPR011856	tRNA endonuclease-like domain
Molecular Function	GO:0003676	nucleic acid binding
Molecular Function	GO:0004518	nuclease activity
Gene3D	G3DSA:3.40.1350.10	no description	7.6e-22	124-212
no_ID
HMMPanther	PTHR21227	TRNA-SPLICING	8.6e-56	43-240
HMMPanther	PTHR21227:SF0	SUBFAMILY	8.6e-56	43-240
Seg	seg	seg	NA	6-23