Miyakogusa Predicted Gene

Lj1g3v3930430.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1ML78_SOYBN 1370 81.5 89.4 (tr|I1ML78) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G02060.1 1288 81.7 91.1 | Symbols: | DEAD/DEAH box helicase, putative | chr3:354409-358319 FORWARD LENGTH=823
Medicago Medtr7g084560.2 1420 83.9 90.2 | DEAD-box-like helicase superfamily protein | HC | chr7:32620956-32636699 | 20130731
Soybean Glyma16g05050.2 1370 81.5 89.4  
LJGI gnl|LJGI|FS320303 1548 99.9 99.9 homologue to UniRef100_Q2HRX1 Cluster: Helicase, C-terminal; Haem peroxidase, plant/fungal/bacterial; n=1; Medicago truncatula|Rep: Helicase, C-terminal; Haem peroxidase, plant/fungal/bacterial - Medicago truncatula (Barrel medic), partial (53%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3930430.1 length: 820 aa.
IPR001650 Helicase, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 2.4e-13 502-574
HMMSmart SM00490 helicase 8.5e-18 491-575
ProfileScan PS51194 HELICASE_CTER 15.414 453-619
IPR003711 CarD-like/TRCF domain
HMMPfam PF02559 CarD_CdnL_TRCF 2.2e-16 139-239
HMMSmart SM01058 CarD-like/TRCF 5.2e-16 138-240
superfamily SSF141259 CarD-like 1.4e-10 128-211
IPR005118 Transcription-repair-coupling factor domain
Molecular Function GO:0003684 damaged DNA binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006281 DNA repair    
HMMPfam PF03461 TRCF 1e-07 670-757
HMMSmart SM00982 no description 0.0053 670-768
IPR011545 DNA/RNA helicase, DEAD/DEAH box type, N-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0008026 ATP-dependent helicase activity    
HMMPfam PF00270 DEAD 2.8e-19 289-429
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 3.9e-31 263-455
ProfileScan PS51192 HELICASE_ATP_BIND_1 20.978 282-444
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.5e-58 315-598
no_ID  
Gene3D G3DSA:3.40.50.300 no description 5.7e-34 253-451
464-620
HMMPanther PTHR24031 FAMILY 9.6e-199 256-775
HMMPanther PTHR24031:SF120SUBFAMILY NOT 9.6e-199 256-775
Seg seg seg NA 18-29
789-800
superfamily SSF143517 TRCF 2.1e-13 655-815
Wolf-PSORT
Lj1g3v3930430.1	chlo 9, mito 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3930430.1