Miyakogusa Predicted Gene

Lj1g3v3904180.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MLB1_SOYBN 1419 80.6 85.9 (tr|I1MLB1) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT2G13540.1 1092 61.7 76.3 | Symbols: ENS, ABH1, CBP80, ATCBP80 | ARM repeat superfamily protein | chr2:5637053-5642813 FORWARD LENGTH=848
Medicago Medtr7g083840.1 1408 79.2 85.2 | nuclear cap-binding protein | HC | chr7:32295941-32281778 | 20130731
Soybean Glyma19g27450.1 1419 80.2 85.9  
LJGI gnl|LJGI|TC59754 1441 100.0 100.0 similar to UniRef100_Q2HUL1 Cluster: Initiation factor eIF-4 gamma, middle; n=1; Medicago truncatula|Rep: Initiation factor eIF-4 gamma, middle - Medicago truncatula (Barrel medic), partial (27%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3904180.1 length: 856 aa.
IPR003890 MIF4G-like, type 3
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0005515 protein binding    
HMMPfam PF02854 MIF4G 5e-21 21-192
HMMSmart SM00543 Middle 3.8e-18 1-229
IPR015172 MIF4G-like, type 1
Biological Process GO:0016070 RNA metabolic process    
HMMPfam PF09088 MIF4G_like 4.2e-41 343-467
IPR015174 MIF4G-like, type 2
Biological Process GO:0016070 RNA metabolic process    
HMMPfam PF09090 MIF4G_like_2 1e-55 500-748
IPR016021 MIF4-like, type 1/2/3
Biological Process GO:0016070 RNA metabolic process    
Gene3D G3DSA:1.25.40.180 no description 2.4e-72 2-291
299-479
727-844
IPR016024 Armadillo-type fold
Molecular Function GO:0005488 binding    
superfamily SSF48371 ARM 1.1e-59 1-296
291-480
478-853
IPR027159 Nuclear cap-binding protein subunit 1
Molecular Function GO:0000339 RNA cap binding    
Cellular Component GO:0005846 nuclear cap binding complex    
Biological Process GO:0045292 mRNA cis splicing, via spliceosome    
Biological Process GO:0051028 mRNA transport    
HMMPanther PTHR12412 CAP 7e-261 4-855
no_ID  
Coil coil coiled-coil NA 644-686
695-723
HMMPanther PTHR12412:SF2 CAP 7e-261 4-855
Seg seg seg NA 380-395
658-679
712-729
Putative transmembrane regions
  From To
TM segments
SOSUI		 331 343
369 391
Wolf-PSORT
Lj1g3v3904180.1	chlo 6, nucl 5, mito 1, plas 1, cysk 1, cysk_plas 1, mito_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3904180.1