Miyakogusa Predicted Gene

Lj1g3v3892330.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1MLD2_SOYBN 988 68.7 76.2 (tr|I1MLD2) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT3G26890.5 387 38.5 51.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:9907456-9910463 REVERSE LENGTH=649

Medicago Medtr7g083230.1 883 63.7 72.5 | meiosis chromosome segregation family protein | HC | chr7:31993269-31987305 | 20130731

Soybean Glyma16g05600.1 988 68.7 76.2

LJGI gnl|LJGI|GO010866 1221 98.9 98.9 similar to UniRef100_A7P9Z8 Cluster: Chromosome chr14 scaffold_9, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_9, whole genome shotgun sequence - Vitis vinifera (Grape), partial (10%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v3892330.2 length: 737 aa.

IPR025261 Domain of unknown function DUF4210

method AccNumber shortName E-value location

HMMPfam PF13915 DUF4210 5.2e-17 406-464

no_ID

HMMPanther PTHR13199 FAMILY 2.4e-122 1-737

HMMPanther PTHR13199:SF8 UNKNOWN 2.4e-122 1-737

HMMPfam PF13889 Chromosome_seg 1e-23 657-736

Seg seg seg NA 29-41
162-172
395-409

Wolf-PSORT

Lj1g3v3892330.2 nucl 13

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v3892330.2

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1MLD2_SOYBN	988	68.7	76.2	(tr\|I1MLD2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT3G26890.5	387	38.5	51.1	\| Symbols: \| unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G41110.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr3:9907456-9910463 REVERSE LENGTH=649
Medicago	Medtr7g083230.1	883	63.7	72.5	\| meiosis chromosome segregation family protein \| HC \| chr7:31993269-31987305 \| 20130731
Soybean	Glyma16g05600.1	988	68.7	76.2
LJGI	gnl\|LJGI\|GO010866	1221	98.9	98.9	similar to UniRef100_A7P9Z8 Cluster: Chromosome chr14 scaffold_9, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr14 scaffold_9, whole genome shotgun sequence - Vitis vinifera (Grape), partial (10%)

IPR025261	Domain of unknown function DUF4210
Lj1g3v3892330.2				length: 737 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF13915	DUF4210	5.2e-17	406-464
no_ID
HMMPanther	PTHR13199	FAMILY	2.4e-122	1-737
HMMPanther	PTHR13199:SF8	UNKNOWN	2.4e-122	1-737
HMMPfam	PF13889	Chromosome_seg	1e-23	657-736
Seg	seg	seg	NA	29-41 162-172 395-409