Miyakogusa Predicted Gene

Lj1g3v3834170.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7MXD2_SOYBN 1482 70.8 79.9 (tr|K7MXD2) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT3G01810.3 565 50.3 62.6 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2). | chr3:289218-292557 FORWARD LENGTH=921

Medicago Medtr7g092460.4 492 48.3 63.2 | nucleolar gar2-like protein | HC | chr7:36641467-36636796 | 20130731

Soybean Glyma16g06420.1 1036 65.5 73.3

LJGI gnl|LJGI|TC70176 1548 100.0 100.0 similar to UniRef100_A7PLR8 Cluster: Chromosome chr14 scaffold_21, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_21, whole genome shotgun sequence - Vitis vinifera (Grape), partial (22%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v3834170.1 length: 1048 aa.

IPR002710 Dilute

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

ProfileScan PS51126 DILUTE 8.977 707-943

IPR019448 EEIG1/EHBP1 N-terminal domain

HMMPfam PF10358 NT-C2 4e-07 14-126

no_ID

Coil coil coiled-coil NA 526-554

HMMPanther PTHR31593 FAMILY 3.8e-118 522-1046

Seg seg seg NA 304-323
798-812
848-865
982-992

Wolf-PSORT

Lj1g3v3834170.1 nucl 7, cyto 4, cysk_nucl 4

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v3834170.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7MXD2_SOYBN	1482	70.8	79.9	(tr\|K7MXD2) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT3G01810.3	565	50.3	62.6	\| Symbols: \| FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: nucleolar protein gar2-related (TAIR:AT2G42320.2). \| chr3:289218-292557 FORWARD LENGTH=921
Medicago	Medtr7g092460.4	492	48.3	63.2	\| nucleolar gar2-like protein \| HC \| chr7:36641467-36636796 \| 20130731
Soybean	Glyma16g06420.1	1036	65.5	73.3
LJGI	gnl\|LJGI\|TC70176	1548	100.0	100.0	similar to UniRef100_A7PLR8 Cluster: Chromosome chr14 scaffold_21, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr14 scaffold_21, whole genome shotgun sequence - Vitis vinifera (Grape), partial (22%)

IPR002710	Dilute
Lj1g3v3834170.1				length: 1048 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
ProfileScan	PS51126	DILUTE	8.977	707-943
IPR019448	EEIG1/EHBP1 N-terminal domain
HMMPfam	PF10358	NT-C2	4e-07	14-126
no_ID
Coil	coil	coiled-coil	NA	526-554
HMMPanther	PTHR31593	FAMILY	3.8e-118	522-1046
Seg	seg	seg	NA	304-323 798-812 848-865 982-992