Miyakogusa Predicted Gene
- Lj1g3v3740540.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7MX73_SOYBN |
385 |
75.7 |
82.6 |
(tr|K7MX73) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT3G27390.1 |
327 |
61.8 |
75.3 |
| Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40640.1); Has 101 Blast hits to 99 proteins in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 101; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:10133372-10136111 REVERSE LENGTH=588 |
| Medicago |
Medtr7g031900.1 |
347 |
66.4 |
75.7 |
| transmembrane protein, putative | HC | chr7:11215732-11207419 | 20130731 |
| Soybean |
Glyma19g07610.1 |
339 |
63.3 |
78.0 |
|
| LJGI |
gnl|LJGI|TC59497 |
1513 |
99.4 |
99.4 |
similar to UniRef100_Q2HU72 Cluster: Steroid nuclear receptor, ligand-binding; n=1; Medicago truncatula|Rep: Steroid nuclear receptor, ligand-binding - Medicago truncatula (Barrel medic), partial (70%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v3740540.2 |
length: 259 aa. |
| no_ID |
|
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR31133 |
FAMILY |
5.7e-129 |
2-259 |
| Seg |
seg |
seg |
NA |
14-34 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
4 |
26 |
| 38 |
60 |
| 72 |
94 |
| 99 |
121 |
| 185 |
207 |
| 231 |
253 |
- Wolf-PSORT
Lj1g3v3740540.2 plas 4, E.R. 4, E.R._plas 4, extr 2, golg 2, nucl_plas 2, cysk_plas 2, cyto_E.R. 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v3740540.2 |
|