Miyakogusa Predicted Gene

Lj1g3v3702650.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1K068_SOYBN 846 79.0 88.3 (tr|I1K068) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G50230.1 728 66.7 82.6 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:20448632-20450855 REVERSE LENGTH=509
Medicago Medtr3g075400.1 815 79.3 87.4 | nucleotide-binding protein | HC | chr3:34318708-34315394 | 20130731
Soybean Glyma05g02850.1 846 79.0 88.3  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3702650.1 length: 514 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 3.7e-05 221-258
306-343
348-384
389-425
451-472
479-513
HMMSmart SM00320 WD40 2.6e-05 219-258
261-300
303-343
346-384
387-426
429-472
475-514
ProfileScan PS50082 WD_REPEATS_2 10.107 226-267
268-309
310-352
361-393
394-435
453-481
482-514
IPR013923 Autophagy-related protein 16
HMMPfam PF08614 ATG16 3.5e-14 33-174
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 3e-72 211-514
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 48.775 226-514
superfamily SSF50978 WD40 2e-70 218-514
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 245-259
330-344
371-385
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 3.8e-07 245-259
330-344
371-385
no_ID  
Coil coil coiled-coil NA 84-161
HMMPanther PTHR19878 AUTOPHAGY 6e-127 9-514
Seg seg seg NA 459-472
Wolf-PSORT
Lj1g3v3702650.1	nucl 9, cyto 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3702650.1