Miyakogusa Predicted Gene

Lj1g3v3646460.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL C6TM83_SOYBN 618 89.9 94.2 (tr|C6TM83) Uncharacterized protein OS=Glycine max PE=2 SV=1
TAIR_pep AT5G14530.1 558 82.2 90.5 | Symbols: | Transducin/WD40 repeat-like superfamily protein | chr5:4684782-4686865 REVERSE LENGTH=330
Medicago Medtr6g007797.1 603 89.0 95.6 | transducin/WD-like repeat-protein | HC | chr6:2008997-2006343 | 20130731
Soybean Glyma19g13070.1 618 89.9 94.2  
LJGI gnl|LJGI|TC70232 1986 100.0 100.0 similar to UniRef100_A7PM45 Cluster: Chromosome chr14 scaffold_21, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_21, whole genome shotgun sequence - Vitis vinifera (Grape), partial (92%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3646460.1 length: 332 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 9e-07 22-55
108-145
HMMSmart SM00320 WD40 53 16-55
106-145
190-231
236-275
278-315
ProfileScan PS50082 WD_REPEATS_2 9.071 23-64
113-147
243-284
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 9.6e-47 20-309
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 17.166 23-284
superfamily SSF50978 WD40 3.9e-48 15-309
no_ID  
HMMPanther PTHR19861 WD40 2.1e-138 7-325
HMMPanther PTHR19861:SF0 SUBFAMILY 2.1e-138 7-325
Wolf-PSORT
Lj1g3v3646460.1	cyto 9, chlo 1, nucl 1, mito 1, plas 1, golg 1, chlo_mito 1, nucl_plas 1, golg_plas 1, mito_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3646460.1