Miyakogusa Predicted Gene
- Lj1g3v3646360.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7MFP3_SOYBN |
349 |
95.4 |
97.7 |
(tr|K7MFP3) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT3G27730.1 |
313 |
83.8 |
92.5 |
| Symbols: RCK, MER3 | ATP binding;ATP-dependent helicases;DNA helicases | chr3:10273952-10280213 REVERSE LENGTH=1133 |
| Medicago |
Medtr7g075463.1 |
337 |
91.9 |
96.5 |
| ATP-binding; ATP-dependent helicase; DNA helicase | HC | chr7:28265418-28275446 | 20130731 |
| Soybean |
Glyma16g07850.1 |
343 |
94.8 |
97.1 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v3646360.1 |
length: 193 aa. |
| IPR001650 |
Helicase, C-terminal |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003676 |
nucleic acid binding |
|
|
| Molecular Function |
GO:0004386 |
helicase activity |
|
|
| Molecular Function |
GO:0005524 |
ATP binding |
|
|
| HMMPfam |
PF00271 |
Helicase_C |
7.2e-07 |
102-158 |
| ProfileScan |
PS51194 |
HELICASE_CTER |
8.816 |
29-193 |
| IPR027417 |
P-loop containing nucleoside triphosphate hydrolase |
| superfamily |
SSF52540 |
P-loop |
7.5e-18 |
17-172 |
| no_ID |
|
| Gene3D |
G3DSA:3.40.50.300 |
no description |
6.9e-17 |
101-152 |
| HMMPanther |
PTHR11752 |
HELICASE |
6.6e-103 |
1-172 |
| HMMPanther |
PTHR11752:SF15 |
PROBABLE |
6.6e-103 |
1-172 |
- Wolf-PSORT
Lj1g3v3646360.1 golg 4, plas 3, nucl 2, mito 2, E.R._plas 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v3646360.1 |
|