Miyakogusa Predicted Gene
- Lj1g3v3620610.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1KZ45_SOYBN |
205 |
36.1 |
51.2 |
(tr|I1KZ45) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT4G26340.1 |
90.5 |
24.4 |
38.8 |
| Symbols: | F-box/RNI-like/FBD-like domains-containing protein | chr4:13324130-13325559 FORWARD LENGTH=419 |
| Medicago |
Medtr7g056277.1 |
198 |
35.5 |
50.5 |
| F-box/RNI/FBD-like domain protein, putative | LC | chr7:19751475-19745288 | 20130731 |
| Soybean |
Glyma08g46320.1 |
205 |
36.1 |
51.2 |
|
| LJGI |
gnl|LJGI|TC81934 |
81.8 |
88.3 |
88.3 |
similar to UniRef100_A7QK65 Cluster: Chromosome chr19 scaffold_111, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr19 scaffold_111, whole genome shotgun sequence - Vitis vinifera (Grape), partial (19%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v3620610.1 |
length: 338 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF00646 |
F-box |
2.3e-06 |
6-37 |
| HMMSmart |
SM00256 |
A |
1.1e-05 |
8-48 |
| ProfileScan |
PS50181 |
FBOX |
9.974 |
2-38 |
| superfamily |
SSF81383 |
F-box |
5.8e-10 |
3-102 |
| IPR006566 |
FBD |
| HMMPfam |
PF08387 |
FBD |
5.9e-10 |
263-306 |
| HMMSmart |
SM00579 |
domain |
2.6e-05 |
266-338 |
| IPR027191 |
F-box family |
| HMMPanther |
PTHR32555 |
F-BOX |
5.3e-18 |
3-39 |
| no_ID |
|
| Gene3D |
G3DSA:3.80.10.10 |
no description |
3.5e-16 |
3-237 |
| superfamily |
SSF52047 |
RNI-like |
1.1e-10 |
78-307 |
- Wolf-PSORT
Lj1g3v3620610.1 cyto 7, chlo 3, nucl 2, plas 1, golg 1, cysk_nucl 1, golg_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v3620610.1 |
|