Miyakogusa Predicted Gene

Lj1g3v3608470.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7LAJ5_SOYBN 351 66.9 78.1 (tr|K7LAJ5) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT3G24340.1 229 46.5 61.9 | Symbols: chr40 | chromatin remodeling 40 | chr3:8832085-8835722 REVERSE LENGTH=1132

Medicago Medtr7g450820.1 320 61.2 72.5 | SNF2 family amine-terminal protein | LC | chr7:16993181-16988673 | 20130731

Soybean Glyma08g45330.1 348 66.9 78.1

LJGI --No_Hits--

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v3608470.1 length: 279 aa.

IPR000330 SNF2-related

method AccNumber shortName E-value location

Molecular Function GO:0003677 DNA binding

Molecular Function GO:0005524 ATP binding

HMMPfam PF00176 SNF2_N 2.8e-15 17-185

IPR014001 Helicase, superfamily 1/2, ATP-binding domain

ProfileScan PS51192 HELICASE_ATP_BIND_1 9.994 1-84

IPR027417 P-loop containing nucleoside triphosphate hydrolase

superfamily SSF52540 P-loop 2.7e-07 13-98
146-268

no_ID

HMMPanther PTHR10799 SWI/SNF-RELATED 2e-68 23-278

HMMPanther PTHR10799:SF41 ATP 2e-68 23-278

Seg seg seg NA 168-184

Wolf-PSORT

Lj1g3v3608470.1 cyto 8, nucl 5

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v3608470.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7LAJ5_SOYBN	351	66.9	78.1	(tr\|K7LAJ5) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT3G24340.1	229	46.5	61.9	\| Symbols: chr40 \| chromatin remodeling 40 \| chr3:8832085-8835722 REVERSE LENGTH=1132
Medicago	Medtr7g450820.1	320	61.2	72.5	\| SNF2 family amine-terminal protein \| LC \| chr7:16993181-16988673 \| 20130731
Soybean	Glyma08g45330.1	348	66.9	78.1
LJGI	--No_Hits--

IPR000330	SNF2-related
Lj1g3v3608470.1				length: 279 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003677	DNA binding
Molecular Function	GO:0005524	ATP binding
HMMPfam	PF00176	SNF2_N	2.8e-15	17-185
IPR014001	Helicase, superfamily 1/2, ATP-binding domain
ProfileScan	PS51192	HELICASE_ATP_BIND_1	9.994	1-84
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	2.7e-07	13-98 146-268
no_ID
HMMPanther	PTHR10799	SWI/SNF-RELATED	2e-68	23-278
HMMPanther	PTHR10799:SF41	ATP	2e-68	23-278
Seg	seg	seg	NA	168-184