Miyakogusa Predicted Gene

Lj1g3v3591750.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL F6GT87_VITVI 948 60.6 76.5 (tr|F6GT87) Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g06100 PE=4 SV=1
TAIR_pep AT1G74600.1 897 53.5 70.0 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:28025153-28027840 REVERSE LENGTH=895
Medicago Medtr7g053240.1 1362 75.2 83.7 | pentatricopeptide (PPR) repeat protein | HC | chr7:18723182-18719939 | 20130731
Soybean Glyma08g45970.1 581 66.8 76.4  
LJGI gnl|LJGI|FS337063 1364 99.9 99.9 weakly similar to UniRef100_A7QI90 Cluster: Chromosome chr17 scaffold_101, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_101, whole genome shotgun sequence - Vitis vinifera (Grape), partial (11%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3591750.1 length: 905 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.29 95-116
299-325
430-459
629-654
731-759
802-825
HMMPfam PF13041 PPR_2 1.4e-08 121-168
225-272
325-373
524-570
HMMPfam PF13812 PPR_3 0.46 764-797
HMMTigr TIGR00756 PPR: 1.4e-05 124-158
327-353
527-561
731-763
ProfileScan PS51375 PPR 5.108 122-156
91-121
157-191
225-259
192-222
325-359
294-324
360-394
427-461
395-425
525-559
494-524
626-660
595-625
727-761
696-726
762-797
798-828
864-898
830-860
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 7.5e-08 696-866
no_ID  
HMMPanther PTHR24015 FAMILY 3.7e-217 76-903
HMMPanther PTHR24015:SF15 OS10G0566900 3.7e-217 76-903
Seg seg seg NA 590-604
Putative transmembrane regions
  From To
TM segments
SOSUI		 1 22
159 181
219 241
261 283
484 506
Wolf-PSORT
Lj1g3v3591750.1	plas 10, E.R. 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3591750.1