Miyakogusa Predicted Gene

Lj1g3v3556890.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1J7R6_SOYBN 541 62.1 69.6 (tr|I1J7R6) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G28730.1 464 55.1 66.3 | Symbols: ATHMG, SSRP1, NFD, HMG | high mobility group | chr3:10784954-10788498 FORWARD LENGTH=646
Medicago Medtr5g082570.1 516 59.8 68.0 | FACT complex subunit SSRP1 | HC | chr5:35502565-35497078 | 20130731
Soybean Glyma01g33240.1 541 62.1 69.6  
LJGI gnl|LJGI|TC72019 2413 99.9 99.9 similar to UniRef100_O04235 Cluster: FACT complex subunit SSRP1; n=1; Vicia faba|Rep: FACT complex subunit SSRP1 - Vicia faba (Broad bean), partial (64%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3556890.1 length: 494 aa.
IPR000969 Structure-specific recognition protein
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
FPrintScan PR00887 SSRCOGNITION 9e-59 95-111
117-133
140-156
205-218
232-250
250-267
276-292
292-310
IPR009071 High mobility group (HMG) box domain
Gene3D G3DSA:1.10.30.10 no description 2.6e-17 430-489
HMMPfam PF00505 HMG_box 3.8e-14 432-489
HMMSmart SM00398 high 1.6e-12 431-492
ProfileScan PS50118 HMG_BOX_2 14.833 432-494
superfamily SSF47095 HMG-box 1.7e-18 416-492
IPR013719 Domain of unknown function DUF1747
HMMPfam PF08512 Rtt106 2.5e-17 225-314
IPR024954 SSRP1 domain
HMMPfam PF03531 SSrecog 8e-43 68-169
no_ID  
HMMPanther PTHR13711 SWI/SNF-RELATED 8.5e-100 224-493
HMMPanther PTHR13711:SF85 STRUCTURE 8.5e-100 224-493
Seg seg seg NA 350-369
388-399
403-433
superfamily SSF50729 PH 1.7e-67 80-316
Wolf-PSORT
Lj1g3v3556890.1	cyto 8, chlo 3, nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3556890.1