Miyakogusa Predicted Gene

Lj1g3v3556830.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KZ54_SOYBN 862 72.7 83.6 (tr|I1KZ54) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT1G06150.1 633 55.5 72.9 | Symbols: EMB1444 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | chr1:1867129-1873194 REVERSE LENGTH=1322
Medicago Medtr7g056073.1 817 73.0 83.5 | basic helix loop helix protein, putative | HC | chr7:19429810-19428206 | 20130731
Soybean Glyma08g46430.1 833 73.2 84.3  
LJGI gnl|LJGI|DC597968 56.0 96.9 96.9 similar to UniRef100_A2Q222 Cluster: Tetratricopeptide-like helical; n=1; Medicago truncatula|Rep: Tetratricopeptide-like helical - Medicago truncatula (Barrel medic), partial (26%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3556830.1 length: 563 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.088 149-174
178-206
412-436
HMMPfam PF12854 PPR_1 7.1e-06 206-234
HMMPfam PF13041 PPR_2 6.2e-13 73-120
236-284
337-384
HMMTigr TIGR00756 PPR: 1.1e-08 77-109
178-206
209-236
239-273
340-373
ProfileScan PS51375 PPR 7.914 74-108
175-209
144-174
109-143
237-271
210-236
272-306
338-372
307-337
373-407
409-439
475-509
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 4.5e-05 468-493
no_ID  
HMMPanther PTHR24015 FAMILY 4.3e-198 15-563
HMMPanther PTHR24015:SF169PENTATRICOPEPTIDE (PPR) 4.3e-198 15-563
Seg seg seg NA 541-552
Wolf-PSORT
Lj1g3v3556830.1	cyto 9, nucl 2, mito 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3556830.1