Miyakogusa Predicted Gene

Lj1g3v3542660.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL B9SV96_RICCO 537 80.4 90.5 (tr|B9SV96) Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1303150 PE=4 SV=1
TAIR_pep AT5G48730.1 521 77.3 89.6 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:19763152-19765136 FORWARD LENGTH=508
Medicago Medtr7g056613.1 619 90.3 96.9 | PPR containing plant-like protein | HC | chr7:20228007-20222513 | 20130731
Soybean Glyma08g46690.1 539 76.7 82.7  
LJGI gnl|LJGI|TC58241 1001 100.0 100.0 similar to UniRef100_A7QAE1 Cluster: Chromosome undetermined scaffold_70, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_70, whole genome shotgun sequence - Vitis vinifera (Grape), partial (36%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3542660.2 length: 318 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.0008 83-108
HMMPfam PF13041 PPR_2 2e-09 114-158
181-229
252-300
HMMTigr TIGR00756 PPR: 6.3e-08 80-112
114-148
184-219
223-254
256-286
290-317
ProfileScan PS51375 PPR 7.980 76-110
111-141
147-181
182-217
218-252
288-318
253-287
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 3.9e-07 173-247
no_ID  
HMMPanther PTHR24015 FAMILY 5.2e-75 44-318
Wolf-PSORT
Lj1g3v3542660.2	cyto 4, chlo 3, cyto_nucl 3, cyto_plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3542660.2