Miyakogusa Predicted Gene
- Lj1g3v3529530.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7L191_MEDTR |
331 |
78.5 |
82.0 |
(tr|G7L191) Transcriptional corepressor LEUNIG OS=Medicago truncatula GN=MTR_7g058460 PE=4 SV=1 |
| TAIR_pep |
AT2G32700.7 |
251 |
66.0 |
74.7 |
| Symbols: LUH | LEUNIG_homolog | chr2:13867235-13871844 FORWARD LENGTH=806 |
| Medicago |
Medtr7g058460.1 |
331 |
78.5 |
82.0 |
| transcriptional corepressor leunig-like protein | HC | chr7:21060485-21052353 | 20130731 |
| Soybean |
Glyma08g46910.2 |
316 |
77.0 |
82.0 |
|
| LJGI |
gnl|LJGI|TC79497 |
1110 |
99.8 |
99.8 |
similar to UniRef100_Q6H975 Cluster: STY-L protein; n=1; Antirrhinum majus|Rep: STY-L protein - Antirrhinum majus (Garden snapdragon), partial (23%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v3529530.1 |
length: 200 aa. |
| IPR006594 |
LisH dimerisation motif |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMSmart |
SM00667 |
Lissencephaly |
0.0035 |
14-46 |
| ProfileScan |
PS50896 |
LISH |
9.251 |
14-46 |
| IPR008116 |
Sequence-specific single-strand DNA-binding protein |
| Molecular Function |
GO:0003697 |
single-stranded DNA binding |
|
|
| HMMPanther |
PTHR12610 |
SINGLE |
2.7e-53 |
1-114 |
| IPR013720 |
LisH dimerisation motif, subgroup |
| HMMPfam |
PF08513 |
LisH |
4.3e-07 |
16-41 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
94-115 |
| HMMPanther |
PTHR12610:SF12 |
SUBFAMILY |
2.7e-53 |
1-114 |
| Seg |
seg |
seg |
NA |
92-114 |
- Wolf-PSORT
Lj1g3v3529530.1 nucl 9, nucl_plas 6.5, plas 2, cyto 1, mito 1, extr 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v3529530.1 |
|