Miyakogusa Predicted Gene

Lj1g3v3529510.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7L191_MEDTR 816 72.0 79.0 (tr|G7L191) Transcriptional corepressor LEUNIG OS=Medicago truncatula GN=MTR_7g058460 PE=4 SV=1
TAIR_pep AT2G32700.6 562 50.6 65.6 | Symbols: LUH | LEUNIG_homolog | chr2:13867235-13871844 FORWARD LENGTH=785
Medicago Medtr7g058460.1 816 72.0 79.0 | transcriptional corepressor leunig-like protein | HC | chr7:21060485-21052353 | 20130731
Soybean Glyma18g36890.1 794 71.5 77.4  
LJGI gnl|LJGI|TC76557 2030 99.5 99.5 similar to UniRef100_A7QAB5 Cluster: Chromosome undetermined scaffold_70, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_70, whole genome shotgun sequence - Vitis vinifera (Grape), partial (43%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3529510.1 length: 556 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.0066 278-307
318-349
356-432
438-473
523-556
HMMSmart SM00320 WD40 0.0097 268-307
310-349
353-393
396-432
435-473
476-515
517-556
ProfileScan PS50082 WD_REPEATS_2 11.745 275-316
317-349
360-402
442-482
524-556
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 3.5e-66 256-556
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 40.392 275-556
superfamily SSF50978 WD40 6.5e-63 279-556
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 294-308
336-350
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 0.0001 294-308
336-350
543-556
no_ID  
HMMPanther PTHR22847 WD40 1.4e-72 115-556
HMMPanther PTHR22847:SF131PUTATIVE UNCHARACTERIZED 1.4e-72 115-556
Seg seg seg NA 64-84
113-123
130-144
152-177
Wolf-PSORT
Lj1g3v3529510.1	nucl 10, chlo 2, cyto 1, cysk 1, chlo_mito 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3529510.1