Miyakogusa Predicted Gene

Lj1g3v3476140.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1N2D3_SOYBN 711 80.8 86.8 (tr|I1N2D3) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT3G07010.1 632 81.8 92.3 | Symbols: | Pectin lyase-like superfamily protein | chr3:2212973-2216306 REVERSE LENGTH=416
Medicago Medtr7g059290.1 709 80.6 87.1 | pectate lyase-like protein | HC | chr7:21393731-21399699 | 20130731
Soybean Glyma18g38430.1 710 80.8 86.8  
LJGI gnl|LJGI|TC67208 184 79.8 79.8 homologue to UniRef100_Q94FT5 Cluster: Pectate lyase; n=1; Fragaria x ananassa|Rep: Pectate lyase - Fragaria ananassa (Strawberry), partial (57%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3476140.1 length: 433 aa.
IPR002022 Pectate lyase/Amb allergen
method AccNumber shortName E-value location
HMMPfam PF00544 Pec_lyase_C 1.6e-61 163-350
HMMSmart SM00656 no description 1.4e-101 159-356
IPR011050 Pectin lyase fold/virulence factor
superfamily SSF51126 Pectin 2.4e-108 84-426
IPR012334 Pectin lyase fold
Gene3D G3DSA:2.160.20.10 no description 5e-128 85-424
IPR018082 AmbAllergen
FPrintScan PR00807 AMBALLERGEN 7.9e-85 107-124
131-156
167-183
231-252
311-330
333-352
375-399
404-427
no_ID  
HMMPanther PTHR31683 FAMILY 5.4e-217 44-433
HMMPanther PTHR31683:SF0 SUBFAMILY 5.4e-217 44-433
Seg seg seg NA 7-19
393-425
Putative transmembrane regions
  From To
TM segments
SOSUI		 1 23
Wolf-PSORT
Lj1g3v3476140.1	plas 7.5, golg_plas 6, golg 3.5, E.R. 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3476140.1