Miyakogusa Predicted Gene

Lj1g3v3446330.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MYG9_SOYBN 556 74.8 78.7 (tr|I1MYG9) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G24310.1 420 75.6 88.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: nucleolus; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; Has 2922 Blast hits to 2454 proteins in 263 species: Archae - 0; Bacteria - 57; Metazoa - 1043; Fungi - 654; Plants - 388; Viruses - 11; Other Eukaryotes - 769 (source: NCBI BLink). | chr1:8624192-8626179 FORWARD LENGTH=377
Medicago Medtr3g085590.1 525 72.3 77.5 | nucleoporin complex subunit 54 | HC | chr3:38683674-38688680 | 20130731
Soybean Glyma18g01150.1 556 74.8 78.7  
LJGI gnl|LJGI|TC61310 2042 99.8 99.8 similar to UniRef100_A7QP89 Cluster: Chromosome chr1 scaffold_136, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr1 scaffold_136, whole genome shotgun sequence - Vitis vinifera (Grape), complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3446330.1 length: 360 aa.
IPR024864 Nucleoporin Nup54/Nup57/Nup44
method AccNumber shortName E-value location
Cellular Component GO:0005643 nuclear pore    
HMMPanther PTHR13000 NUCLEOPORIN 9e-82 1-360
IPR025712 Nucleoporin Nup54, alpha-helical domain
HMMPfam PF13874 Nup54 4.8e-33 144-290
no_ID  
HMMPanther PTHR13000:SF0 SUBFAMILY 9e-82 1-360
Seg seg seg NA 50-91
Wolf-PSORT
Lj1g3v3446330.1	chlo 6, nucl_plas 3.83333, nucl 3.5, cyto_nucl 2.66667, mito 2, plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3446330.1