Miyakogusa Predicted Gene

Lj1g3v3445320.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KJZ0_SOYBN 2815 70.8 79.1 (tr|I1KJZ0) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT5G02310.1 1573 45.6 59.8 | Symbols: PRT6 | proteolysis 6 | chr5:474279-482552 FORWARD LENGTH=2006
Medicago Medtr7g061540.3 2711 68.0 77.6 | E3 ubiquitin-protein ligase | HC | chr7:22181282-22167423 | 20130731
Soybean Glyma07g15840.1 2726 71.2 79.4  
LJGI gnl|LJGI|TC73963 1879 100.0 100.0 similar to UniRef100_A7PNM8 Cluster: Chromosome chr8 scaffold_23, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr8 scaffold_23, whole genome shotgun sequence - Vitis vinifera (Grape), partial (8%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3445320.1 length: 1986 aa.
IPR003126 Zinc finger, N-recognin
method AccNumber shortName E-value location
Molecular Function GO:0004842 ubiquitin-protein ligase activity    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF02207 zf-UBR 2.4e-20 114-182
ProfileScan PS51157 ZF_UBR 10.699 113-183
IPR013993 Zinc finger, N-recognin, metazoa
HMMSmart SM00396 Putative 3.8e-20 113-182
no_ID  
HMMPanther PTHR21497 UBIQUITIN 0 8-1986
HMMPanther PTHR21497:SF6 UBIQUITIN 0 8-1986
Seg seg seg NA 160-168
279-289
479-491
1005-1016
1058-1066
1085-1094
1128-1137
1138-1150
1248-1266
1381-1403
1716-1733
1745-1762
Putative transmembrane regions
  From To
TM segments
SOSUI		 973 995
999 1020
1028 1050
1717 1739
1964 1985
Wolf-PSORT
Lj1g3v3445320.1	plas 9, nucl 3, cyto 1, vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3445320.1