Miyakogusa Predicted Gene
- Lj1g3v3438940.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SVI0_LOTJA |
1110 |
96.6 |
96.8 |
(tr|I3SVI0) Pectinesterase OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT1G11580.1 |
604 |
55.2 |
68.5 |
| Symbols: ATPMEPCRA, PMEPCRA | methylesterase PCR A | chr1:3888730-3890649 FORWARD LENGTH=557 |
| Medicago |
Medtr7g050870.1 |
884 |
76.6 |
85.7 |
| pectinesterase/pectinesterase inhibitor | HC | chr7:17775709-17778012 | 20130731 |
| Soybean |
Glyma01g45110.1 |
884 |
76.6 |
85.3 |
|
| LJGI |
gnl|LJGI|TC71168 |
2817 |
99.9 |
99.9 |
similar to UniRef100_Q8RVX1 Cluster: Pectin methylesterase precursor; n=1; Sesbania rostrata|Rep: Pectin methylesterase precursor - Sesbania rostrata, partial (84%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v3438940.1 |
length: 554 aa. |
| IPR000070 |
Pectinesterase, catalytic |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005618 |
cell wall |
|
|
| Molecular Function |
GO:0030599 |
pectinesterase activity |
|
|
| Biological Process |
GO:0042545 |
cell wall modification |
|
|
| HMMPfam |
PF01095 |
Pectinesterase |
7.5e-145 |
241-540 |
| IPR006501 |
Pectinesterase inhibitor |
| Molecular Function |
GO:0004857 |
enzyme inhibitor activity |
|
|
| Molecular Function |
GO:0030599 |
pectinesterase activity |
|
|
| Gene3D |
G3DSA:1.20.140.40 |
no description |
5.1e-17 |
55-197 |
| HMMPfam |
PF04043 |
PMEI |
5e-25 |
55-196 |
| HMMSmart |
SM00856 |
Plant |
2.5e-13 |
47-196 |
| HMMTigr |
TIGR01614 |
PME_inhib: |
1.5e-14 |
55-194 |
| superfamily |
SSF101148 |
Plant |
7.8e-14 |
55-203 |
| IPR011050 |
Pectin lyase fold/virulence factor |
| superfamily |
SSF51126 |
Pectin |
1e-109 |
234-554 |
| IPR012334 |
Pectin lyase fold |
| Gene3D |
G3DSA:2.160.20.10 |
no description |
1e-117 |
240-551 |
| IPR018040 |
Pectinesterase, active site |
| PatternScan |
PS00503 |
PECTINESTERASE_2 |
NA |
385-394 |
| PatternScan |
PS00800 |
PECTINESTERASE_1 |
NA |
266-285 |
| no_ID |
|
| HMMPanther |
PTHR31707 |
FAMILY |
1.1e-236 |
55-554 |
| HMMPanther |
PTHR31707:SF0 |
SUBFAMILY |
1.1e-236 |
55-554 |
| Seg |
seg |
seg |
NA |
24-38 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
20 |
42 |
- Wolf-PSORT
Lj1g3v3438940.1 cyto_nucl 4, nucl 3.5, cyto 3.5, chlo 2, mito 1, plas 1, extr 1, pero 1, golg 1, golg_plas 1, mito_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v3438940.1 |
|