Miyakogusa Predicted Gene

Lj1g3v3407660.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3S0B5_LOTJA 770 99.2 99.2 (tr|I3S0B5) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT4G34460.1 607 79.9 89.9 | Symbols: AGB1, ELK4, ATAGB1 | GTP binding protein beta 1 | chr4:16477393-16479266 REVERSE LENGTH=377
Medicago Medtr3g116500.2 734 93.9 97.1 | guanine nucleotide-binding protein beta subunit-like protein | HC | chr3:54501019-54496204 | 20130731
Soybean Glyma04g01460.1 728 92.3 97.3  
LJGI gnl|LJGI|TC59674 2248 100.0 100.0 homologue to UniRef100_Q9SW94 Cluster: G protein beta subunit; n=1; Pisum sativum|Rep: G protein beta subunit - Pisum sativum (Garden pea), complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3407660.1 length: 377 aa.
IPR001632 G-protein, beta subunit
method AccNumber shortName E-value location
FPrintScan PR00319 GPROTEINB 5.7e-28 61-77
80-94
99-114
117-134
IPR001680 WD40 repeat
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 0.00025 57-93
108-135
150-185
201-233
241-276
339-368
HMMSmart SM00320 WD40 0.02 54-93
96-135
145-185
192-233
237-276
279-323
329-369
ProfileScan PS50082 WD_REPEATS_2 11.043 61-102
152-194
200-242
244-285
337-368
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.5e-70 57-368
IPR016346 Guanine nucleotide-binding protein, beta subunit
HMMPIR PIRSF002394 Guanine 4.2e-199 1-369
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 49.065 61-377
superfamily SSF50978 WD40 8.3e-72 59-369
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 80-94
172-186
310-324
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 1.3e-07 80-94
172-186
220-234
no_ID  
Coil coil coiled-coil NA 3-24
HMMPanther PTHR19850 GUANINE 5e-213 1-377
HMMPanther PTHR19850:SF3 GUANINE 5e-213 1-377
Wolf-PSORT
Lj1g3v3407660.1	nucl 9, chlo 3, cyto 1, vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3407660.1