Miyakogusa Predicted Gene

Lj1g3v3404340.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1K790_SOYBN 652 72.1 80.1 (tr|I1K790) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT2G33610.1 440 53.3 68.7 | Symbols: ATSWI3B, CHB2, SWI3B | switch subunit 3 | chr2:14229023-14231149 FORWARD LENGTH=469
Medicago Medtr3g116120.1 621 69.1 80.9 | SWI/SNF complex subunit SWI3B-like protein | HC | chr3:54294108-54291302 | 20130731
Soybean Glyma04g01600.1 639 72.1 79.9  
LJGI gnl|LJGI|TC70501 2639 99.8 99.8 similar to UniRef100_A7QPG8 Cluster: Chromosome chr18 scaffold_137, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_137, whole genome shotgun sequence - Vitis vinifera (Grape), partial (68%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3404340.1 length: 476 aa.
IPR001005 SANT/Myb domain
method AccNumber shortName E-value location
Molecular Function GO:0003682 chromatin binding    
HMMPfam PF00249 Myb_DNA-binding 3e-10 230-273
HMMSmart SM00717 SANT 5.3e-11 228-276
IPR007526 SWIRM domain
Molecular Function GO:0005515 protein binding    
HMMPfam PF04433 SWIRM 4.8e-28 58-142
ProfileScan PS50934 SWIRM 24.490 56-151
IPR009057 Homeodomain-like
Molecular Function GO:0003677 DNA binding    
Gene3D G3DSA:1.10.10.60 no description 5.8e-08 229-272
superfamily SSF46689 Homeodomain-like 5.2e-11 51-157
228-292
IPR011991 Winged helix-turn-helix DNA-binding domain
Gene3D G3DSA:1.10.10.10 no description 3.9e-28 57-149
IPR017884 SANT domain
ProfileScan PS51293 SANT 17.326 227-278
no_ID  
Coil coil coiled-coil NA 425-446
HMMPanther PTHR12802 SWI/SNF 4e-134 55-433
HMMPanther PTHR12802:SF19 PREDICTED 4e-134 55-433
Seg seg seg NA 2-38
226-237
338-349
Wolf-PSORT
Lj1g3v3404340.1	nucl 9, chlo 3, cyto 1, vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3404340.1