Miyakogusa Predicted Gene

Lj1g3v3404290.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL M8CGB2_AEGTA 110 44.0 64.2 (tr|M8CGB2) Uncharacterized protein OS=Aegilops tauschii GN=F775_09674 PE=4 SV=1
TAIR_pep AT2G33620.4 98.6 42.1 61.2 | Symbols: | AT hook motif DNA-binding family protein | chr2:14234749-14236563 FORWARD LENGTH=351
Medicago Medtr8g031100.1 104 43.8 62.8 | AT hook motif DNA-binding family protein | HC | chr8:11612156-11619041 | 20130731
Soybean Glyma10g32150.1 98.2 53.1 67.3  
LJGI gnl|LJGI|TC62181 1437 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3404290.1 length: 292 aa.
IPR000116 High mobility group, HMG-I/HMG-Y
method AccNumber shortName E-value location
Cellular Component GO:0000785 chromatin    
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
FPrintScan PR00930 HIGHMOBLTYIY 1.2e-05 72-84
108-127
IPR000637 HMG-I/HMG-Y, DNA-binding, conserved site
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
PatternScan PS00354 HMGI_Y NA 116-127
IPR005175 Domain of unknown function DUF296
HMMPfam PF03479 DUF296 1.2e-29 145-257
IPR017956 AT hook, DNA-binding motif
Molecular Function GO:0003677 DNA binding    
HMMPfam PF02178 AT_hook 9.4 74-84
119-130
HMMSmart SM00384 DNA 4.7 74-86
119-131
IPR020478 AT hook-like
FPrintScan PR00929 ATHOOK 2.2e-05 74-84
117-128
no_ID  
Gene3D G3DSA:3.30.1330.80 no description 5.8e-27 145-262
HMMPanther PTHR31500 FAMILY 1.3e-58 1-255
HMMPanther PTHR31500:SF0 SUBFAMILY 1.3e-58 1-255
Seg seg seg NA 16-35
44-82
86-95
117-134
234-249
272-291
superfamily SSF117856 AF0104/ALDC/Ptd012-like 1.6e-23 141-279
Putative transmembrane regions
  From To
TM segments
SOSUI		 235 257
Wolf-PSORT
Lj1g3v3404290.1	nucl 11, golg 1, cyto_pero 1, E.R._plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3404290.1