Miyakogusa Predicted Gene
- Lj1g3v3391180.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1K7A1_SOYBN |
1028 |
81.4 |
89.2 |
(tr|I1K7A1) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G76400.1 |
829 |
66.4 |
81.8 |
| Symbols: | Ribophorin I | chr1:28658713-28661672 REVERSE LENGTH=614 |
| Medicago |
Medtr3g115980.1 |
1020 |
81.5 |
89.3 |
| ribophorin I family protein | HC | chr3:54222813-54229323 | 20130731 |
| Soybean |
Glyma06g01790.1 |
1028 |
81.4 |
89.2 |
|
| LJGI |
gnl|LJGI|TC74235 |
1324 |
100.0 |
100.0 |
similar to UniRef100_A5BH88 Cluster: Peptidyl-prolyl cis-trans isomerase; n=1; Vitis vinifera|Rep: Peptidyl-prolyl cis-trans isomerase - Vitis vinifera (Grape), partial (28%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v3391180.1 |
length: 619 aa. |
| IPR007676 |
Ribophorin I |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0004579 |
dolichyl-diphosphooligosaccharide-protein glycotransferase activity |
|
|
| Cellular Component |
GO:0005783 |
endoplasmic reticulum |
|
|
| Biological Process |
GO:0006486 |
protein glycosylation |
|
|
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| HMMPanther |
PTHR21049 |
RIBOPHORIN |
5.2e-221 |
1-616 |
| HMMPfam |
PF04597 |
Ribophorin_I |
2.1e-140 |
32-460 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
588-616 |
| HMMPanther |
PTHR21049:SF0 |
SUBFAMILY |
5.2e-221 |
1-616 |
| Seg |
seg |
seg |
NA |
524-541 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
11 |
33 |
| 440 |
462 |
- Wolf-PSORT
Lj1g3v3391180.1 vacu 7, chlo 2, plas 2, extr 1, E.R. 1, golg 1, chlo_mito 1, nucl_plas 1, cysk_plas 1, mito_plas 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v3391180.1 |
|