Miyakogusa Predicted Gene

Lj1g3v3385800.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
TrEMBL G7J5Y2_MEDTR 1424 77.7 85.7 (tr|G7J5Y2) Glutamate receptor OS=Medicago truncatula GN=MTR_3g115910 PE=3 SV=1
TAIR_pep AT1G42540.1 1137 60.1 76.1 | Symbols: ATGLR3.3, GLR3.3 | glutamate receptor 3.3 | chr1:15973489-15976703 FORWARD LENGTH=933
Medicago Medtr3g115910.2 1425 77.7 85.7 | glutamate receptor 3.2 | HC | chr3:54174846-54179813 | 20130731
Soybean Glyma06g01860.1 1394 74.6 84.7  
LJGI gnl|LJGI|BP056069 377 91.3 91.3 similar to UniRef100_A4GU97 Cluster: Glutamate receptor; n=1; Malus hupehensis|Rep: Glutamate receptor - Malus hupehensis, partial (1%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v3385800.1 length: 928 aa.
IPR000337 GPCR, family 3
method AccNumber shortName E-value location
Molecular Function GO:0004930 G-protein coupled receptor activity    
Biological Process GO:0007186 G-protein coupled receptor signaling pathway    
Cellular Component GO:0016021 integral to membrane    
FPrintScan PR00248 GPCRMGR 4.7e-12 106-132
138-157
157-173
173-190
IPR001320 Ionotropic glutamate receptor
Molecular Function GO:0004970 ionotropic glutamate receptor activity    
Molecular Function GO:0005234 extracellular-glutamate-gated ion channel activity    
Cellular Component GO:0016020 membrane    
HMMPfam PF00060 Lig_chan 1.5e-36 595-846
HMMSmart SM00079 Eukaryotic 5.4e-55 474-815
IPR001638 Extracellular solute-binding protein, family 3
Molecular Function GO:0005215 transporter activity    
Biological Process GO:0006810 transport    
Cellular Component GO:0030288 outer membrane-bounded periplasmic space    
HMMPfam PF00497 SBP_bac_3 2e-18 493-813
IPR001828 Extracellular ligand-binding receptor
HMMPfam PF01094 ANF_receptor 6.6e-70 55-408
IPR017103 Ionotropic glutamate receptor, plant
HMMPIR PIRSF037090 Ionotropic 0 1-926
no_ID  
Gene3D G3DSA:1.10.287.70 no description 4.8e-31 583-700
Gene3D G3DSA:3.40.190.10 no description 0.00064 778-817
701-776
Gene3D G3DSA:3.40.50.2300 no description 4.3e-23 303-396
154-302
HMMPanther PTHR18966 IONOTROPIC 0 1-922
HMMPanther PTHR18966:SF7 GLUTAMATE 0 1-922
Seg seg seg NA 3-21
310-323
477-491
superfamily SSF53822 Periplasmic 1.9e-94 30-467
superfamily SSF53850 Periplasmic 5.9e-46 441-818
Putative transmembrane regions
  From To
TM segments
SOSUI
5 27
34 56
593 615
624 645
654 676
842 864
Wolf-PSORT
Lj1g3v3385800.1	plas 13
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v3385800.1